View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10078_low_7 (Length: 405)
Name: NF10078_low_7
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10078_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 4599148 - 4598769
Alignment:
| Q |
19 |
ctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggtaatatttatattacatacnnnnnnnnnnnnnnnnnnnnna |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
4599148 |
ctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggtaatatttatattacattcttttaaattttctttttattta |
4599049 |
T |
|
| Q |
119 |
cttctaacatagaatgcaagataatatagtctgtatatcaaccatttaatattttttggttctttcctaatcaaatcaattgtctaataannnnnnnnnn |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4599048 |
cttctaacatagaatgcaagataatatagtctgtatatcaaccatttaatattttttggttctttcctaatcaaatcaattgtctaataattttattttt |
4598949 |
T |
|
| Q |
219 |
----gaaaattctaataaatttaaatcataggtatgaacgaggacaatgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
4598948 |
ttttgaaaattctaataaatttaaatcataggtatgaacgaggacaatgattcaacgctgtcactcgaagaggcgctcatggatactaacagaattgact |
4598849 |
T |
|
| Q |
315 |
actattatcgtcatctatattatgtttcttctgcaatcaggtagcacccttttacttctactaaattattttctctctct |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4598848 |
actattatcgtcatctatattatgtttcttctgcaatcaggtagcacccttttacttctattaaattattttctctctct |
4598769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 219 - 364
Target Start/End: Complemental strand, 4623447 - 4623302
Alignment:
| Q |
219 |
gaaaattctaataaatttaaatcataggtatgaacgaggacaatgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgattacta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4623447 |
gaaaattctaataaatttaaatcataggtatgaatgaagtcaatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattactt |
4623348 |
T |
|
| Q |
319 |
ttatcgtcatctatattatgtttcttctgcaatcaggtagcaccct |
364 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
4623347 |
ttatcgtcatctatattatcttttatctgcaatgaggtagcaccct |
4623302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 4623575 - 4623500
Alignment:
| Q |
19 |
ctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggtaatatttatattacat |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4623575 |
ctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggtaatatttatattacat |
4623500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 353
Target Start/End: Complemental strand, 25016140 - 25016030
Alignment:
| Q |
243 |
taggtatgaacgaggacaatgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgattactattatcgtcatctatattatgtttc |
342 |
Q |
| |
|
|||||||| ||||| ||||||| |||| || ||||| ||||| || || ||||||||| ||||||||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
25016140 |
taggtatggacgagctcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttattatgtttc |
25016041 |
T |
|
| Q |
343 |
ttctgcaatca |
353 |
Q |
| |
|
|||||||||| |
|
|
| T |
25016040 |
atctgcaatca |
25016030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 353
Target Start/End: Complemental strand, 25037423 - 25037313
Alignment:
| Q |
243 |
taggtatgaacgaggacaatgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgattactattatcgtcatctatattatgtttc |
342 |
Q |
| |
|
|||||||| ||||| |||||| ||||||| ||||| |||||||| |||||||||||| ||||||| ||||||| |||||| ||||| |||||| |||| |
|
|
| T |
25037423 |
taggtatggacgagttaaatgatccaacgctatcacttgaagaggcgctcatggatacttacagaatcgattacttttatcgacatctttattatatttc |
25037324 |
T |
|
| Q |
343 |
ttctgcaatca |
353 |
Q |
| |
|
|||||||||| |
|
|
| T |
25037323 |
atctgcaatca |
25037313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 25002270 - 25002311
Alignment:
| Q |
296 |
gatactaacagaattgattactattatcgtcatctatattat |
337 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| |||||| |
|
|
| T |
25002270 |
gatactgacagaattgattacttttatcgtcatctttattat |
25002311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 25037710 - 25037649
Alignment:
| Q |
18 |
actactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggta |
79 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| |||| |||||| |||||||||| |
|
|
| T |
25037710 |
actactgttgtacacaaagacaaagtataacaaccctgtgatttacataaccgaaaatggta |
25037649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 25016447 - 25016383
Alignment:
| Q |
18 |
actactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggtaata |
82 |
Q |
| |
|
|||||||||| |||||||| ||||||||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
25016447 |
actactgttgcacacaaagacaaagtataataatccattgatttacataacagaaaatggtaata |
25016383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 219 - 364
Target Start/End: Original strand, 18805556 - 18805701
Alignment:
| Q |
219 |
gaaaattctaataaatttaaatcataggtatgaacgaggacaatgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgattacta |
318 |
Q |
| |
|
||||| ||||||||||||||||||||||| | || ||| || ||||| |||| || |||||||||||| | |||||||||| | | |||||||||||| | |
|
|
| T |
18805556 |
gaaaactctaataaatttaaatcataggtttaaatgagtacgatgatccaaccctatcactcgaagagacgctcatggatatttatagaattgattacca |
18805655 |
T |
|
| Q |
319 |
ttatcgtcatctatattatgtttcttctgcaatcaggtagcaccct |
364 |
Q |
| |
|
|||||||||||| ||||| ||| | ||||||||||||||||||||| |
|
|
| T |
18805656 |
ttatcgtcatctttattacgttgcatctgcaatcaggtagcaccct |
18805701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 18805411 - 18805481
Alignment:
| Q |
19 |
ctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggtaatatttatat |
89 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
18805411 |
ctactgttgtacataaagaaaaagtataacaatcctgttatttacataacagaaaatggtaatacttatat |
18805481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University