View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10078_low_8 (Length: 403)

Name: NF10078_low_8
Description: NF10078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10078_low_8
NF10078_low_8
[»] chr2 (26 HSPs)
chr2 (1-387)||(35738134-35738522)
chr2 (233-354)||(29078028-29078151)
chr2 (229-286)||(36889749-36889806)
chr2 (230-350)||(3603504-3603626)
chr2 (226-293)||(7184877-7184944)
chr2 (320-354)||(5921647-5921681)
chr2 (320-354)||(32933682-32933716)
chr2 (229-291)||(36888337-36888399)
chr2 (268-354)||(35408782-35408869)
chr2 (231-312)||(3607015-3607098)
chr2 (322-354)||(39149937-39149969)
chr2 (311-354)||(39912887-39912930)
chr2 (320-354)||(32933852-32933886)
chr2 (324-354)||(37412839-37412869)
chr2 (324-354)||(38275716-38275746)
chr2 (320-354)||(41377615-41377649)
chr2 (325-354)||(18565162-18565191)
chr2 (325-354)||(25642529-25642558)
chr2 (325-354)||(27883564-27883593)
chr2 (325-354)||(27883718-27883747)
chr2 (325-354)||(32503798-32503827)
chr2 (325-354)||(34484307-34484336)
chr2 (325-354)||(39454547-39454576)
chr2 (325-354)||(40694436-40694465)
chr2 (229-293)||(43820323-43820387)
chr2 (326-354)||(44915836-44915864)
[»] chr5 (12 HSPs)
chr5 (222-354)||(37966806-37966940)
chr5 (223-312)||(19718866-19718955)
chr5 (268-384)||(33957286-33957404)
chr5 (251-354)||(5152876-5152980)
chr5 (311-350)||(2597348-2597387)
chr5 (324-354)||(9693179-9693209)
chr5 (320-354)||(35263755-35263789)
chr5 (320-354)||(40589145-40589179)
chr5 (320-354)||(40589748-40589782)
chr5 (325-354)||(9693014-9693043)
chr5 (325-354)||(28392030-28392059)
chr5 (326-354)||(40774434-40774462)
[»] chr3 (29 HSPs)
chr3 (227-355)||(20184445-20184575)
chr3 (231-286)||(21815909-21815964)
chr3 (228-293)||(27688484-27688549)
chr3 (226-286)||(21817402-21817462)
chr3 (227-286)||(14859135-14859194)
chr3 (320-354)||(8846337-8846371)
chr3 (228-286)||(27695577-27695635)
chr3 (317-354)||(50819308-50819345)
chr3 (317-354)||(50856519-50856556)
chr3 (269-354)||(588411-588498)
chr3 (225-293)||(39991500-39991568)
chr3 (320-350)||(8846167-8846197)
chr3 (320-354)||(15862436-15862470)
chr3 (228-286)||(39992496-39992554)
chr3 (320-354)||(40410803-40410837)
chr3 (325-355)||(43844358-43844388)
chr3 (317-354)||(7743026-7743063)
chr3 (325-354)||(12123340-12123369)
chr3 (325-354)||(40926107-40926136)
chr3 (268-354)||(40969293-40969380)
chr3 (325-354)||(45171164-45171193)
chr3 (325-354)||(46766719-46766748)
chr3 (268-354)||(46766874-46766962)
chr3 (325-354)||(52606224-52606253)
chr3 (325-354)||(53841287-53841316)
chr3 (325-354)||(54107765-54107794)
chr3 (228-280)||(32304230-32304282)
chr3 (326-354)||(45171328-45171356)
chr3 (225-293)||(45940675-45940743)
[»] chr6 (18 HSPs)
chr6 (226-312)||(14403684-14403770)
chr6 (228-286)||(21611913-21611971)
chr6 (230-350)||(29467221-29467343)
chr6 (232-350)||(17971783-17971903)
chr6 (229-286)||(21282816-21282873)
chr6 (229-293)||(29751135-29751199)
chr6 (229-312)||(29465754-29465837)
chr6 (230-293)||(29744781-29744844)
chr6 (230-280)||(5660199-5660249)
chr6 (242-382)||(14907034-14907176)
chr6 (232-286)||(5659106-5659161)
chr6 (323-354)||(11525027-11525058)
chr6 (324-354)||(33544917-33544947)
chr6 (228-269)||(21283922-21283963)
chr6 (325-354)||(33972467-33972496)
chr6 (320-352)||(1860749-1860781)
chr6 (228-280)||(12260444-12260496)
chr6 (326-354)||(12903318-12903346)
[»] chr7 (18 HSPs)
chr7 (225-286)||(21709153-21709214)
chr7 (231-286)||(26024888-26024943)
chr7 (230-312)||(40738193-40738275)
chr7 (230-312)||(45088228-45088310)
chr7 (268-354)||(22338310-22338398)
chr7 (232-350)||(45087067-45087187)
chr7 (232-337)||(19543492-19543599)
chr7 (226-286)||(21710603-21710663)
chr7 (324-354)||(11678963-11678993)
chr7 (320-354)||(26920178-26920212)
chr7 (317-354)||(18731107-18731144)
chr7 (317-354)||(23437413-23437450)
chr7 (325-354)||(41758775-41758804)
chr7 (325-354)||(47251158-47251187)
chr7 (268-354)||(47305165-47305252)
chr7 (326-354)||(10625180-10625208)
chr7 (230-286)||(26025868-26025924)
chr7 (326-354)||(43726503-43726531)
[»] chr4 (33 HSPs)
chr4 (229-286)||(756486-756543)
chr4 (230-286)||(702652-702708)
chr4 (230-286)||(770951-771007)
chr4 (222-286)||(16038267-16038331)
chr4 (230-286)||(35060455-35060511)
chr4 (226-355)||(51645903-51646033)
chr4 (223-293)||(36220595-36220665)
chr4 (229-286)||(35055332-35055389)
chr4 (230-286)||(701633-701689)
chr4 (230-286)||(769932-769988)
chr4 (227-286)||(757501-757560)
chr4 (231-355)||(36219408-36219533)
chr4 (230-293)||(11038577-11038640)
chr4 (316-354)||(42779607-42779645)
chr4 (317-354)||(43316967-43317004)
chr4 (324-354)||(4965966-4965996)
chr4 (320-354)||(9010596-9010630)
chr4 (320-354)||(12381315-12381349)
chr4 (232-286)||(16039680-16039734)
chr4 (324-354)||(25218345-25218375)
chr4 (324-354)||(28570682-28570712)
chr4 (324-354)||(34959092-34959122)
chr4 (222-280)||(40681509-40681567)
chr4 (320-354)||(44428662-44428696)
chr4 (324-354)||(54136186-54136216)
chr4 (325-354)||(4793860-4793889)
chr4 (325-354)||(25593352-25593381)
chr4 (317-350)||(33625952-33625985)
chr4 (317-354)||(34958919-34958956)
chr4 (325-354)||(38866494-38866523)
chr4 (325-354)||(44170076-44170105)
chr4 (325-354)||(45911675-45911704)
chr4 (325-354)||(53645547-53645576)
[»] chr8 (25 HSPs)
chr8 (226-286)||(39567059-39567119)
chr8 (226-293)||(9311017-9311084)
chr8 (232-286)||(44633776-44633830)
chr8 (230-285)||(14816570-14816625)
chr8 (230-285)||(14829115-14829170)
chr8 (231-286)||(45378550-45378605)
chr8 (229-286)||(39270796-39270853)
chr8 (320-354)||(35224028-35224062)
chr8 (232-286)||(39568510-39568564)
chr8 (228-293)||(9312171-9312236)
chr8 (311-350)||(45436424-45436463)
chr8 (324-354)||(119211-119241)
chr8 (324-354)||(1825904-1825934)
chr8 (324-354)||(1860349-1860379)
chr8 (320-354)||(31230874-31230908)
chr8 (320-354)||(35223865-35223899)
chr8 (320-354)||(39240121-39240155)
chr8 (230-280)||(45377427-45377477)
chr8 (325-354)||(24456913-24456942)
chr8 (325-354)||(40094571-40094600)
chr8 (317-354)||(44255123-44255160)
chr8 (227-267)||(14819391-14819431)
chr8 (265-350)||(29769398-29769485)
chr8 (322-354)||(30568369-30568401)
chr8 (228-280)||(44632704-44632756)
[»] scaffold0029 (2 HSPs)
scaffold0029 (230-293)||(71824-71887)
scaffold0029 (229-293)||(70668-70732)
[»] scaffold0031 (3 HSPs)
scaffold0031 (226-286)||(123420-123480)
scaffold0031 (226-286)||(134296-134356)
scaffold0031 (229-286)||(129421-129478)
[»] chr1 (30 HSPs)
chr1 (225-309)||(6241248-6241332)
chr1 (230-286)||(51597961-51598017)
chr1 (230-278)||(51599443-51599491)
chr1 (230-280)||(16963434-16963484)
chr1 (229-350)||(6242633-6242756)
chr1 (229-280)||(16962009-16962060)
chr1 (230-293)||(46015852-46015915)
chr1 (268-354)||(3569414-3569502)
chr1 (317-354)||(27209257-27209294)
chr1 (231-286)||(50682589-50682644)
chr1 (324-354)||(10654290-10654320)
chr1 (324-354)||(22584613-22584643)
chr1 (324-354)||(24590486-24590516)
chr1 (320-354)||(30611481-30611515)
chr1 (324-354)||(42607617-42607647)
chr1 (324-354)||(50574609-50574639)
chr1 (325-354)||(29257084-29257113)
chr1 (325-354)||(32564211-32564240)
chr1 (228-293)||(33332175-33332240)
chr1 (233-286)||(33333414-33333467)
chr1 (325-354)||(37199182-37199211)
chr1 (228-293)||(46014699-46014764)
chr1 (325-354)||(46949997-46950026)
chr1 (268-354)||(51691912-51691999)
chr1 (325-354)||(51810233-51810262)
chr1 (229-293)||(15073922-15073986)
chr1 (326-354)||(19986383-19986411)
chr1 (326-354)||(32517774-32517802)
chr1 (322-354)||(34028814-34028846)
chr1 (326-354)||(40534022-40534050)
[»] scaffold0394 (1 HSPs)
scaffold0394 (227-293)||(14267-14334)
[»] scaffold0194 (1 HSPs)
scaffold0194 (229-293)||(19240-19304)
[»] scaffold0022 (1 HSPs)
scaffold0022 (311-354)||(93450-93493)
[»] scaffold0444 (1 HSPs)
scaffold0444 (320-354)||(11759-11793)
[»] scaffold0128 (1 HSPs)
scaffold0128 (320-354)||(45097-45131)
[»] scaffold0809 (1 HSPs)
scaffold0809 (325-354)||(4434-4463)
[»] scaffold0045 (2 HSPs)
scaffold0045 (326-354)||(65836-65864)
scaffold0045 (326-354)||(73168-73196)


Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 35738134 - 35738522
Alignment:
Q  1 tgtatctatatcagattttgttgcagtagacattaccgttacatcttttgtttcttaatttttggtatatttttagtaattcacttgtgagtttcttaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35738134 tgtatctatatcagattttgttgcagtagacattaccgttacatcttttgtttcttaatttttggtatatttttagtaattcacttgtgtgtttcttaac 35738233  T
Q  101 ctaaaacttagctcaagattcattatatacatttgaattcctaggtttggttctaagctccttaaaaaagggtttgtttctaagnnnnnnnccgggacac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  35738234 ctaaaacttagctcaagattcattatatacatttgaattcctaggtttggttctaagctccttaaaaaagggtttgtttctaagaaaaaaaccgggacac 35738333  T
Q  201 aggcagtatgttataattgataatatttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatc 300  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35738334 aggcagtatgttataattgataatatttaggcttaattactattttcgttccttaactaattttttggtatcgctttggttccatatctaaaatttgatc 35738433  T
Q  301 cgttttggta--ttaactttatctttgttacacattttggtcatttccgttagtttagtaaaaaatacattagggtttgtacaagtctc 387  Q
    | ||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35738434 cattttggtattttaactttatctttgttacatattttggtcatttccgttagtttagtaaaaaatacattagggtttgtacaagtctc 35738522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 354
Target Start/End: Complemental strand, 29078151 - 29078028
Alignment:
Q  233 ttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtatt--aactttatctttgttaca 330  Q
    ||||||||||||||||| |||  |||| ||  ||  ||||| |||||| | |||  ||||||||| ||||||||||||||  || ||||||| |||||||    
T  29078151 ttaattgctattttcgtccctcaactatttaattaatatcgttttggtccaataattaaaatttgttccgttttggtattttaagtttatctctgttaca 29078052  T
Q  331 cattttggtcatttccgttagttt 354  Q
    |||||||||||||| | |||||||    
T  29078051 cattttggtcattttcattagttt 29078028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 36889806 - 36889749
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||||||||||||||||| || |||| |||||||||||||||||| |||||| |||||    
T  36889806 aggcttaattgctattttagtcccttaactaattttttggtatcggtttggtcccata 36889749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 350
Target Start/End: Original strand, 3603504 - 3603626
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgtt 327  Q
    |||||||||| ||||||||| |||| |||| || ||| ||||||||||||| || |   ||||||||| |  |||||||||  |||| ||||||| ||||    
T  3603504 ggcttaattgttattttcgtcccttaactatttatttagtatcgctttggtcccttgattaaaatttgttatgttttggtattttaagtttatctctgtt 3603603  T
Q  328 acacattttggtcatttccgtta 350  Q
    ||| ||||| ||| |||||||||    
T  3603604 acatattttagtcctttccgtta 3603626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 7184877 - 7184944
Alignment:
Q  226 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    ||||||||||||||||||||| ||  ||| |||||||||||||||||| |||| | ||||| ||||||    
T  7184877 tttaggcttaattgctattttagtctcttaactaattttttggtatcggtttgatcccataactaaaa 7184944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 5921681 - 5921647
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||||||    
T  5921681 tctttgttacacattttggtcatttccgttagttt 5921647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 32933682 - 32933716
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||||||    
T  32933682 tctttgttacacattttggtcatttccgttagttt 32933716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 291
Target Start/End: Original strand, 36888337 - 36888399
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaa 291  Q
    |||||||||||||||||| || ||||  ||||||||||||||||| |||||| ||||| ||||    
T  36888337 aggcttaattgctattttagtcccttagctaattttttggtatcggtttggtcccataactaa 36888399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 35408869 - 35408782
Alignment:
Q  268 gtatcgctttggttccatatctaaaatttgatccgttttggtat--taactttatctttgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||| ||  |||||||||||   |||||||||  ||||||  ||| ||||||||||||||||| |||||||||||||    
T  35408869 gtatcgctttggttccttaattaaaatttgatttattttggtatcttaacttc-tctctgttacacattttggtcctttccgttagttt 35408782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 3607098 - 3607015
Alignment:
Q  231 gcttaattgctattttcgttccttcactaatttt--ttggtatcgctttggttccatatctaaaatttgatccgttttggtatt 312  Q
    |||||||||||||||||||||||| | |||||||  || ||||||||||| |||| ||  ||||||||  ||||||||| ||||    
T  3607098 gcttaattgctattttcgttccttaattaattttaattagtatcgctttgattccttaattaaaatttattccgttttgatatt 3607015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 39149937 - 39149969
Alignment:
Q  322 tttgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||||    
T  39149937 tttgttacacattttggtcatttccgttagttt 39149969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 39912930 - 39912887
Alignment:
Q  311 ttaactttatctttgttacacattttggtcatttccgttagttt 354  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||    
T  39912930 ttaactttctctctgttacaccttttggtcatttccgttagttt 39912887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 32933886 - 32933852
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||| |||||||||||||    
T  32933886 tctttgttacacattttggtcctttccgttagttt 32933852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 37412869 - 37412839
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  37412869 tgttacacattttggtcatttccgttagttt 37412839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 38275746 - 38275716
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  38275746 tgttacacattttggtcatttccgttagttt 38275716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 41377649 - 41377615
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||| |||||||||    
T  41377649 tctttgttacacattttggtcattttcgttagttt 41377615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 18565162 - 18565191
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  18565162 gttacacattttggtcatttccgttagttt 18565191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 25642558 - 25642529
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  25642558 gttacacattttggtcatttccgttagttt 25642529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 27883564 - 27883593
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  27883564 gttacacattttggtcatttccgttagttt 27883593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 27883747 - 27883718
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  27883747 gttacacattttggtcatttccgttagttt 27883718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 32503827 - 32503798
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  32503827 gttacacattttggtcatttccgttagttt 32503798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 34484336 - 34484307
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  34484336 gttacacattttggtcatttccgttagttt 34484307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 39454547 - 39454576
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  39454547 gttacacattttggtcatttccgttagttt 39454576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 40694465 - 40694436
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  40694465 gttacacattttggtcatttccgttagttt 40694436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 43820387 - 43820323
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    |||||||| ||||||||| ||||||| |||| ||  |||||||||||||||| || || ||||||    
T  43820387 aggcttaaatgctattttggttccttaactatttaattggtatcgctttggtcccttaactaaaa 43820323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 44915836 - 44915864
Alignment:
Q  326 ttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||    
T  44915836 ttacacattttggtcatttccgttagttt 44915864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 354
Target Start/End: Original strand, 37966806 - 37966940
Alignment:
Q  222 aatatttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaacttta 319  Q
    |||||||||||||||||| ||||||||| |||| |||| ||  || ||||  ||||||| |||||  ||||||||| ||||||||||||  |||| ||||    
T  37966806 aatatttaggcttaattgttattttcgtcccttaactatttaattagtattactttggtcccataattaaaatttgttccgttttggtattttaaattta 37966905  T
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    |||  |||||| ||||||||||||| |||||||||    
T  37966906 tctcggttacatattttggtcattttcgttagttt 37966940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 312
Target Start/End: Complemental strand, 19718955 - 19718866
Alignment:
Q  223 atatttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtatt 312  Q
    |||||||||||||||||||||||| || | || ||||||||||||||||||||||| | | ||| ||||||    |||||||||||||||    
T  19718955 atatttaggcttaattgctattttagtcctttaactaattttttggtatcgctttgatcctataactaaaaaaaaatccgttttggtatt 19718866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 384
Target Start/End: Complemental strand, 33957404 - 33957286
Alignment:
Q  268 gtatcgctttggttccatatctaaaatttgatccgttttggtatt--aactttatctttgttacacattttggtcatttccgttagtttagtaaaaaata 365  Q
    ||||| ||||||| |||||  ||||||||  ||||||||| ||||  || |||||||  |||||| |||||||||||||||||| ||||| | ||||| |    
T  33957404 gtatcactttggtcccataattaaaatttattccgttttgatattttaagtttatctccgttacaaattttggtcatttccgttggtttaattaaaaaaa 33957305  T
Q  366 cattagggtttgtacaagt 384  Q
      |||||||||||||||||    
T  33957304 agttagggtttgtacaagt 33957286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 5152980 - 5152876
Alignment:
Q  251 ccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtat-taactttatctttgttacacattttggtcatttccgtt 349  Q
    |||| |||| || ||| ||||||||||||| || ||  |||||||||||   ||||||||| | | ||| ||||||||||||||||||||||||||||||    
T  5152980 ccttaactatttatttagtatcgctttggtcccttaattaaaatttgatttattttggtatcttaatttctctttgttacacattttggtcatttccgtt 5152881  T
Q  350 agttt 354  Q
     ||||    
T  5152880 ggttt 5152876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 350
Target Start/End: Complemental strand, 2597387 - 2597348
Alignment:
Q  311 ttaactttatctttgttacacattttggtcatttccgtta 350  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  2597387 ttaactttctctttgttacacgttttggtcatttccgtta 2597348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 9693209 - 9693179
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  9693209 tgttacacattttggtcatttccgttagttt 9693179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 35263789 - 35263755
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||| |||||||||||||    
T  35263789 tctttgttacacattttggtcctttccgttagttt 35263755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 40589145 - 40589179
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||| ||||||||    
T  40589145 tctttgttacacattttggtcatttctgttagttt 40589179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 40589748 - 40589782
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||| ||||||||    
T  40589748 tctttgttacacattttggtcatttctgttagttt 40589782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 9693014 - 9693043
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  9693014 gttacacattttggtcatttccgttagttt 9693043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 28392059 - 28392030
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  28392059 gttacacattttggtcatttccgttagttt 28392030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 40774434 - 40774462
Alignment:
Q  326 ttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||    
T  40774434 ttacacattttggtcatttccgttagttt 40774462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 355
Target Start/End: Original strand, 20184445 - 20184575
Alignment:
Q  227 ttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatcttt 324  Q
    ||||||||||||| |||||| || |||| |||||||||||||||||| |||||| ||||| |||||| |  |||||||||||||  |||||||||| ||     
T  20184445 ttaggcttaattgttattttagtcccttaactaattttttggtatcggtttggtcccataactaaaaataaatccgttttggtattttaactttattttc 20184544  T
Q  325 gttacacattttggtcatttccgttagttta 355  Q
      |||||||||| ||| ||||||||| ||||    
T  20184545 agtacacattttagtcctttccgttaattta 20184575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 21815909 - 21815964
Alignment:
Q  231 gcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||    
T  21815909 gcttaattgctattttcgtcccttaactaattttttagtatcgctttggttccata 21815964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 27688484 - 27688549
Alignment:
Q  228 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    ||||||||||||||||||| || |||| ||||||| |||||||||| |||||| ||||| ||||||    
T  27688484 taggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaa 27688549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 21817462 - 21817402
Alignment:
Q  226 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||| |||||||| |||||||| | |||| ||||||||||||||||||||||||| |||||    
T  21817462 tttaagcttaattactattttcatcccttaactaattttttggtatcgctttggtcccata 21817402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 14859194 - 14859135
Alignment:
Q  227 ttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||||||||||| | |||| | || |||||| |||||||||||||||||||    
T  14859194 ttaggcttaattgctattttcttcccttaaatatttttttagtatcgctttggttccata 14859135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 8846371 - 8846337
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||||||    
T  8846371 tctttgttacacattttggtcatttccgttagttt 8846337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 27695635 - 27695577
Alignment:
Q  228 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||||||||| || |||| ||||||| |||||||||| |||||| |||||    
T  27695635 taggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccata 27695577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 50819308 - 50819345
Alignment:
Q  317 ttatctttgttacacattttggtcatttccgttagttt 354  Q
    |||||| |||||||||||||||||||||||||||||||    
T  50819308 ttatctctgttacacattttggtcatttccgttagttt 50819345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 50856556 - 50856519
Alignment:
Q  317 ttatctttgttacacattttggtcatttccgttagttt 354  Q
    |||||| |||||||||||||||||||||||||||||||    
T  50856556 ttatctctgttacacattttggtcatttccgttagttt 50856519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 588498 - 588411
Alignment:
Q  269 tatcgctttggttccatatctaaaatttgatccgttttggtat--taactttatctttgttacacattttggtcatttccgttagttt 354  Q
    |||||||| |||||| ||  |||||||||||  ||||||||||  ||| ||| ||| ||||||||||||||||| ||| |||||||||    
T  588498 tatcgcttcggttccttaattaaaatttgatttgttttggtatcttaattttctctctgttacacattttggtcctttacgttagttt 588411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 39991500 - 39991568
Alignment:
Q  225 atttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    |||||| |||||||| |||||| ||||||| |||||||||||| ||||| |||| | ||||| ||||||    
T  39991500 atttagacttaattgttattttagttccttaactaattttttgatatcgttttgatcccataactaaaa 39991568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 350
Target Start/End: Original strand, 8846167 - 8846197
Alignment:
Q  320 tctttgttacacattttggtcatttccgtta 350  Q
    |||||||||||||||||||||||||||||||    
T  8846167 tctttgttacacattttggtcatttccgtta 8846197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 15862470 - 15862436
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||| |||||||||||||    
T  15862470 tctttgttacacattttggtcctttccgttagttt 15862436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 39992554 - 39992496
Alignment:
Q  228 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||| ||||||| || |||| ||||||||||||||||| |||| || |||||    
T  39992554 taggcttaattactattttagtcccttaactaattttttggtatcacttttgtcccata 39992496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 40410803 - 40410837
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||| ||||||||||||||    
T  40410803 tctttgttacacattttggttatttccgttagttt 40410837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 355
Target Start/End: Complemental strand, 43844388 - 43844358
Alignment:
Q  325 gttacacattttggtcatttccgttagttta 355  Q
    |||||||||||||||||||||||||||||||    
T  43844388 gttacacattttggtcatttccgttagttta 43844358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 7743063 - 7743026
Alignment:
Q  317 ttatctttgttacacattttggtcatttccgttagttt 354  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  7743063 ttatctctgttacacattttggtcctttccgttagttt 7743026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 12123369 - 12123340
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  12123369 gttacacattttggtcatttccgttagttt 12123340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 40926107 - 40926136
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  40926107 gttacacattttggtcatttccgttagttt 40926136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 40969293 - 40969380
Alignment:
Q  268 gtatcgctttggttccatatctaaaatttgatccgttttggtat--taactttatctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||| || ||  |||||||||||   |||||||||  ||||||| ||||  ||||||||||||||||||||||| |||||    
T  40969293 gtatcgctttggtcccttaattaaaatttgatttattttggtatcttaactttctcttc-ttacacattttggtcatttccgtcagttt 40969380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 45171164 - 45171193
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  45171164 gttacacattttggtcatttccgttagttt 45171193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 46766719 - 46766748
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  46766719 gttacacattttggtcatttccgttagttt 46766748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 46766962 - 46766874
Alignment:
Q  268 gtatcgctttggttccatatctaaaatttgatccgttttggtat--taactttatctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||| || ||  |||||||||||   |||| ||||  ||||||| |||  |||||||||||||||||||| |||||||||    
T  46766962 gtatcgctttggtcccttaattaaaatttgatttatttttgtatcttaactttctctccgttacacattttggtcatttacgttagttt 46766874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 52606224 - 52606253
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  52606224 gttacacattttggtcatttccgttagttt 52606253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 53841316 - 53841287
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  53841316 gttacacattttggtcatttccgttagttt 53841287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 54107765 - 54107794
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  54107765 gttacacattttggtcatttccgttagttt 54107794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 32304230 - 32304282
Alignment:
Q  228 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 280  Q
    |||||||||||||| ||||||| |||| | | ||| |||||||||||||||||    
T  32304230 taggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggt 32304282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 45171356 - 45171328
Alignment:
Q  326 ttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||    
T  45171356 ttacacattttggtcatttccgttagttt 45171328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 45940743 - 45940675
Alignment:
Q  225 atttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    |||||||||||| ||||||||| || |||| |||| ||  |||||||||||||||| || || ||||||    
T  45940743 atttaggcttaaatgctattttggtcccttaactatttaattggtatcgctttggtcccttaactaaaa 45940675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 14403684 - 14403770
Alignment:
Q  226 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtatt 312  Q
    ||||||||||||||||||||| || ||||  ||||||| |||||||| ||||||| ||||| |||||||||| ||| ||||||||||    
T  14403684 tttaggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtatt 14403770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 21611913 - 21611971
Alignment:
Q  228 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||||    
T  21611913 taggcttaattgctattttcgtcccttaactaattttttggtatcgatttggtcccata 21611971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 350
Target Start/End: Complemental strand, 29467343 - 29467221
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgtt 327  Q
    |||||||||||||||||||| |||| |||| || ||| |||| |||||||| |  ||  ||||||||| ||||||| | ||  |||| ||||||| ||||    
T  29467343 ggcttaattgctattttcgtcccttaactatttatttagtattgctttggtcctttaattaaaatttgttccgtttagatattttaagtttatctctgtt 29467244  T
Q  328 acacattttggtcatttccgtta 350  Q
    ||| ||||| |||||||||||||    
T  29467243 acatattttagtcatttccgtta 29467221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 350
Target Start/End: Complemental strand, 17971903 - 17971783
Alignment:
Q  232 cttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgttac 329  Q
    |||||||| |||||||||||||| |||| |||  | ||||||||||||| || ||  | ||||||| ||| ||||||||  |||| |||||||  ||| |    
T  17971903 cttaattgatattttcgttccttaactattttagtagtatcgctttggtcccttaattcaaatttgttccattttggtattttaagtttatctccgttgc 17971804  T
Q  330 acattttggtcatttccgtta 350  Q
    ||||||||||| |||||||||    
T  17971803 acattttggtcctttccgtta 17971783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 21282816 - 21282873
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||||||||||| |||| | ||||||||| ||||||||||||| |||||    
T  21282816 aggcttaattgctattttcgtcccttaattaatttttttgtatcgctttggtcccata 21282873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 29751199 - 29751135
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    |||||||||||||||||| || |||| ||||||| |||||||||| |||||| ||||| ||||||    
T  29751199 aggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaa 29751135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 312
Target Start/End: Original strand, 29465754 - 29465837
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtatt 312  Q
    ||||||||||||||||||||| |||| |||||||  || ||||| ||||||  || ||  ||||||||| ||||||||||||||    
T  29465754 aggcttaattgctattttcgtcccttaactaattaattagtatcactttggccccttaattaaaatttgttccgttttggtatt 29465837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 29744781 - 29744844
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    ||||||||||||||||| || |||| ||||||| |||||||||| |||||| ||||| ||||||    
T  29744781 ggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaa 29744844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 5660249 - 5660199
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 280  Q
    |||||||||||||||||||| |||  |||||||||||||||||| ||||||    
T  5660249 ggcttaattgctattttcgtccctaaactaattttttggtatcgttttggt 5660199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 382
Target Start/End: Original strand, 14907034 - 14907176
Alignment:
Q  242 attttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtatt--aactttatctttgttacacattttggt 339  Q
    |||||||| | ||||||||||||||  ||| | |||||| || ||  |||||   ||||||||||||||||  ||||||||||  ||||||| ||||| |    
T  14907034 attttcgtcctttcactaatttttttatattgttttggtcccctaattaaaaaaagatccgttttggtatttaaactttatctccgttacacgttttgat 14907133  T
Q  340 catttccgtt-agtttagtaaaaaatacattagggtttgtacaa 382  Q
    |||||||||| | |||| ||||||| |  |||||||||||||||    
T  14907134 catttccgttaattttattaaaaaaca-gttagggtttgtacaa 14907176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 5659106 - 5659161
Alignment:
Q  232 cttaattgctatttt-cgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||||| ||| |||| ||||||||||||||||| ||||||| |||||    
T  5659106 cttaattgctatttttcgtcccttaactaattttttggtatcactttggtcccata 5659161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 354
Target Start/End: Complemental strand, 11525058 - 11525027
Alignment:
Q  323 ttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||||    
T  11525058 ttgttacacattttggtcatttccgttagttt 11525027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Original strand, 33544917 - 33544947
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  33544917 tgttacacattttggtcatttccgttagttt 33544947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 21283963 - 21283922
Alignment:
Q  228 taggcttaattgctattttcgttccttcactaattttttggt 269  Q
    |||||||||||| ||||||||| |||| ||||||||||||||    
T  21283963 taggcttaattgttattttcgtcccttaactaattttttggt 21283922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 33972496 - 33972467
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  33972496 gttacacattttggtcatttccgttagttt 33972467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 1860781 - 1860749
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagt 352  Q
    |||| ||||||||||||||||||||||||||||    
T  1860781 tcttcgttacacattttggtcatttccgttagt 1860749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 12260444 - 12260496
Alignment:
Q  228 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 280  Q
    |||||||||||||| ||||||| |||| | | ||| |||||||||||||||||    
T  12260444 taggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggt 12260496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 12903318 - 12903346
Alignment:
Q  326 ttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||    
T  12903318 ttacacattttggtcatttccgttagttt 12903346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 21709153 - 21709214
Alignment:
Q  225 atttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||    
T  21709153 atttaggcttaattgctattttcgtcccttaactaattttttagtatcgctttggtcccata 21709214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 26024888 - 26024943
Alignment:
Q  231 gcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||| ||||| |||| ||| ||||||||||||||||||||| |||||    
T  26024888 gcttaattgctatcttcgtcccttaacttattttttggtatcgctttggtcccata 26024943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 40738193 - 40738275
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtatt 312  Q
    |||||||||||||||||||| |||  |||||||  || ||||||||||||| || ||  ||||||||| || |||||||||||    
T  40738193 ggcttaattgctattttcgtccctcaactaattaattagtatcgctttggtcccttaattaaaatttgttctgttttggtatt 40738275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 45088310 - 45088228
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtatt 312  Q
    ||||||||||||||||| || |||| ||||||| |||||||||  |||||| ||||| ||||||   | ||||||||||||||    
T  45088310 ggcttaattgctattttagtcccttaactaattgtttggtatcagtttggtcccataactaaaaaaaggtccgttttggtatt 45088228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 22338310 - 22338398
Alignment:
Q  268 gtatcgctttggttccatatctaaaatttgatccgttttggtat--taactttatctttgttacacattttggtcatttccgttagttt 354  Q
    |||| |||||||| || ||  |||||||||||   |||||||||  ||||||| | | |||||||||||||||||||||||||||||||    
T  22338310 gtattgctttggtaccttaattaaaatttgatttattttggtatcttaactttctatctgttacacattttggtcatttccgttagttt 22338398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 350
Target Start/End: Original strand, 45087067 - 45087187
Alignment:
Q  232 cttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgttac 329  Q
    |||||||| |||||| || | || |||||||||||||||||| |||||| ||||| ||||||   | ||||||||||||  ||||||||  ||  |||||    
T  45087067 cttaattgttattttagtcctttaactaattttttggtatcggtttggtcccataactaaaaaaaggtccgttttggtattttaacttttgctccgttac 45087166  T
Q  330 acattttggtcatttccgtta 350  Q
    |  |||||||| |||||||||    
T  45087167 atgttttggtcttttccgtta 45087187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 337
Target Start/End: Original strand, 19543492 - 19543599
Alignment:
Q  232 cttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgttac 329  Q
    |||||||||||||||||| |||| |||| || ||| ||||||||||| | || ||  ||||||||  ||||||||| ||  |||| ||||||| ||||||    
T  19543492 cttaattgctattttcgtcccttaactatttatttagtatcgctttgatcccttaattaaaatttattccgttttgatattttaagtttatctctgttac 19543591  T
Q  330 acattttg 337  Q
    | ||||||    
T  19543592 atattttg 19543599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 21710663 - 21710603
Alignment:
Q  226 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||||||| ||||| |||||| || |||| ||| ||||||||||||||||||||| |||||    
T  21710663 tttaggctgaattgatatttttgtcccttaacttattttttggtatcgctttggtcccata 21710603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 11678993 - 11678963
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  11678993 tgttacacattttggtcatttccgttagttt 11678963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 26920212 - 26920178
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||| |||||||    
T  26920212 tctttgttacacattttggtcatttccattagttt 26920178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 18731107 - 18731144
Alignment:
Q  317 ttatctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  18731107 ttatcttcgttacacattttggtcctttccgttagttt 18731144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 23437450 - 23437413
Alignment:
Q  317 ttatctttgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||| || ||||||||||    
T  23437450 ttatctttgttacacattttggtccttcccgttagttt 23437413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 41758775 - 41758804
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  41758775 gttacacattttggtcatttccgttagttt 41758804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 47251187 - 47251158
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  47251187 gttacacattttggtcatttccgttagttt 47251158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 47305165 - 47305252
Alignment:
Q  268 gtatcgctttggttccatatctaaaatttgatccgttttggtat--taactttatctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||| || ||  |||||||||||   |||||||||  |||||||||||   |||||||||||| ||||||||||||||||    
T  47305165 gtatcgctttggtcccttaattaaaatttgatttattttggtatcttaactttatctcc-ttacacattttgatcatttccgttagttt 47305252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 10625180 - 10625208
Alignment:
Q  326 ttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||    
T  10625180 ttacacattttggtcatttccgttagttt 10625208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 26025924 - 26025868
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||||||| || | || |||||||| ||||||| |||||| |||||||    
T  26025924 ggcttaattgctatttttgtcctttaactaatttcttggtattgctttgattccata 26025868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 43726531 - 43726503
Alignment:
Q  326 ttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||    
T  43726531 ttacacattttggtcatttccgttagttt 43726503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 756486 - 756543
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||    
T  756486 aggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccata 756543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 702708 - 702652
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||    
T  702708 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccata 702652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 771007 - 770951
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||    
T  771007 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccata 770951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 16038267 - 16038331
Alignment:
Q  222 aatatttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||    
T  16038267 aataattaggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccata 16038331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 35060511 - 35060455
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||    
T  35060511 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccata 35060455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 355
Target Start/End: Complemental strand, 51646033 - 51645903
Alignment:
Q  226 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctt 323  Q
    ||||||||||||||||||||| || ||||  ||||||||||||||||| |||||| ||||| ||||||   | ||||||||||||  |||| |||||||     
T  51646033 tttaggcttaattgctattttagtcccttagctaattttttggtatcggtttggtcccataactaaaaaaag-tccgttttggtattttaagtttatctc 51645935  T
Q  324 tgttacacattttggtcatttccgttagttta 355  Q
     ||||||  |||||||| ||||||| ||||||    
T  51645934 cgttacatgttttggtcctttccgtcagttta 51645903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 36220665 - 36220595
Alignment:
Q  223 atatttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    |||| ||||||||||||||||||| || |||| |||||||||||||||||| |||||| ||||| ||||||    
T  36220665 atatataggcttaattgctattttagtaccttaactaattttttggtatcgttttggtcccataactaaaa 36220595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 35055332 - 35055389
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||    
T  35055332 aggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccata 35055389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 701633 - 701689
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||    
T  701633 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccata 701689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 769932 - 769988
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||    
T  769932 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccata 769988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 757560 - 757501
Alignment:
Q  227 ttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||||||||||| | |||| ||| ||||||||||||||||||||| |||||    
T  757560 ttaggcttaattgctattttcatcccttaacttattttttggtatcgctttggtcccata 757501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 355
Target Start/End: Original strand, 36219408 - 36219533
Alignment:
Q  231 gcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgtta 328  Q
    |||||||||||||||| || |||| ||||||||||  |||||| |||||| ||||| ||||||   | |||||||| |||  |||| |||||||  ||||    
T  36219408 gcttaattgctattttagtcccttaactaatttttgagtatcggtttggtcccataactaaaaaaag-tccgttttagtattttaagtttatctccgtta 36219506  T
Q  329 cacattttggtcatttccgttagttta 355  Q
    || ||||||||||||||||| ||||||    
T  36219507 catattttggtcatttccgtcagttta 36219533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 11038577 - 11038640
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    ||||||||||||||||| || ||||  ||||||||||||||| |||||||| ||||| ||||||    
T  11038577 ggcttaattgctattttagtcccttagctaattttttggtattgctttggtcccataactaaaa 11038640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 42779607 - 42779645
Alignment:
Q  316 tttatctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  42779607 tttatctttgttacacattttggtcttttccgttagttt 42779645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 43316967 - 43317004
Alignment:
Q  317 ttatctttgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||| |||||||||||||    
T  43316967 ttatctttgttacacattttggtcctttccgttagttt 43317004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Original strand, 4965966 - 4965996
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  4965966 tgttacacattttggtcatttccgttagttt 4965996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 9010596 - 9010630
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||| |||||||||||||    
T  9010596 tctttgttacacattttggtcctttccgttagttt 9010630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 12381349 - 12381315
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||| |||||||||||||    
T  12381349 tctttgttacacattttggtcctttccgttagttt 12381315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 16039734 - 16039680
Alignment:
Q  232 cttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||||| || |||| |||||||||||||||||| || ||| |||||    
T  16039734 cttaattgctatttttgtcccttaactaattttttggtatcgtttcggtcccata 16039680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 25218375 - 25218345
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  25218375 tgttacacattttggtcatttccgttagttt 25218345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 28570712 - 28570682
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  28570712 tgttacacattttggtcatttccgttagttt 28570682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 34959122 - 34959092
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  34959122 tgttacacattttggtcatttccgttagttt 34959092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 40681567 - 40681509
Alignment:
Q  222 aatatttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 280  Q
    |||| ||||||||||||||| ||||||| |||| | | ||| |||||||||||||||||    
T  40681567 aataattaggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggt 40681509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 44428662 - 44428696
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||| |||||||||||||    
T  44428662 tctttgttacacattttggtcctttccgttagttt 44428696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Original strand, 54136186 - 54136216
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  54136186 tgttacacattttggtcatttccgttagttt 54136216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 4793889 - 4793860
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  4793889 gttacacattttggtcatttccgttagttt 4793860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 25593381 - 25593352
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  25593381 gttacacattttggtcatttccgttagttt 25593352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 350
Target Start/End: Original strand, 33625952 - 33625985
Alignment:
Q  317 ttatctttgttacacattttggtcatttccgtta 350  Q
    |||||| |||||||||||||||||||||||||||    
T  33625952 ttatctctgttacacattttggtcatttccgtta 33625985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 34958919 - 34958956
Alignment:
Q  317 ttatctttgttacacattttggtcatttccgttagttt 354  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  34958919 ttatctctgttacacaatttggtcatttccgttagttt 34958956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 38866494 - 38866523
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  38866494 gttacacattttggtcatttccgttagttt 38866523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 44170076 - 44170105
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  44170076 gttacacattttggtcatttccgttagttt 44170105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 45911675 - 45911704
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  45911675 gttacacattttggtcatttccgttagttt 45911704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 53645547 - 53645576
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  53645547 gttacacattttggtcatttccgttagttt 53645576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 39567059 - 39567119
Alignment:
Q  226 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||    
T  39567059 tttaggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccata 39567119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 9311017 - 9311084
Alignment:
Q  226 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    ||||||||||||||||||||| || ||||  |||||||||||||||||||||||| ||||| ||||||    
T  9311017 tttaggcttaattgctattttagtcccttatctaattttttggtatcgctttggtcccataactaaaa 9311084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 44633830 - 44633776
Alignment:
Q  232 cttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  44633830 cttaattgctattttggttccttaactaattttttggtatcgctttggtcccata 44633776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 14816570 - 14816625
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccat 285  Q
    ||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||    
T  14816570 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccat 14816625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 14829170 - 14829115
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccat 285  Q
    ||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||    
T  14829170 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccat 14829115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 45378605 - 45378550
Alignment:
Q  231 gcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||||||| |||||    
T  45378605 gcttaattgctattttcgtcccttaaataattttttggtatcgctttggtcccata 45378550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 39270853 - 39270796
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||| |||||| |||||    
T  39270853 aggcttaattgctattttcgtcccttaacttattttttggtatcgttttggtcccata 39270796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 35224062 - 35224028
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||||||    
T  35224062 tctttgttacacattttggtcatttccgttagttt 35224028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 39568564 - 39568510
Alignment:
Q  232 cttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||||||| || |||| ||||||||||| |||||| ||||||||||||    
T  39568564 cttaattgctatttttgtcccttaactaattttttagtatcgttttggttccata 39568510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 9312236 - 9312171
Alignment:
Q  228 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    |||| |||||||||||||| || | || ||||||||||||||||||||||| | ||||| ||||||    
T  9312236 taggtttaattgctattttagtcctttaactaattttttggtatcgctttgatcccataactaaaa 9312171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 350
Target Start/End: Complemental strand, 45436463 - 45436424
Alignment:
Q  311 ttaactttatctttgttacacattttggtcatttccgtta 350  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  45436463 ttaactttctctctgttacacattttggtcatttccgtta 45436424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Original strand, 119211 - 119241
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  119211 tgttacacattttggtcatttccgttagttt 119241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Original strand, 1825904 - 1825934
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  1825904 tgttacacattttggtcatttccgttagttt 1825934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Original strand, 1860349 - 1860379
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  1860349 tgttacacattttggtcatttccgttagttt 1860379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 31230908 - 31230874
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||| |||||||||||||    
T  31230908 tctttgttacacattttggtcctttccgttagttt 31230874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 35223865 - 35223899
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||| ||||    
T  35223865 tctttgttacacattttggtcatttccgtttgttt 35223899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 39240121 - 39240155
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    |||| ||||||||||||||||||||||||||||||    
T  39240121 tcttcgttacacattttggtcatttccgttagttt 39240155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 45377427 - 45377477
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 280  Q
    |||||||||| ||||||||| |||| | | |||||||||||||||||||||    
T  45377427 ggcttaattgttattttcgtcccttaattgattttttggtatcgctttggt 45377477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 24456942 - 24456913
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  24456942 gttacacattttggtcatttccgttagttt 24456913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 40094571 - 40094600
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  40094571 gttacacattttggtcatttccgttagttt 40094600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 44255160 - 44255123
Alignment:
Q  317 ttatctttgttacacattttggtcatttccgttagttt 354  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  44255160 ttatctctgttacacattttggtcatttacgttagttt 44255123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 14819431 - 14819391
Alignment:
Q  227 ttaggcttaattgctattttcgttccttcactaattttttg 267  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  14819431 ttaggcttaattgctattttagtcccttaactaattttttg 14819391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 350
Target Start/End: Original strand, 29769398 - 29769485
Alignment:
Q  265 ttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgttacacattttggtcatttccgtta 350  Q
    ||||| ||| ||||||||| || ||||| ||||||   |||||||   |||||||| |||||||||||  ||||||||||||||||||    
T  29769398 ttggtttcggtttggttccttaactaaattttgatttattttggtcccttaactttctctttgttacaagttttggtcatttccgtta 29769485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 30568369 - 30568401
Alignment:
Q  322 tttgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||| ||||    
T  30568369 tttgttacacattttggtcatttccgtttgttt 30568401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 44632704 - 44632756
Alignment:
Q  228 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 280  Q
    |||| |||||||||||||||||  ||| | |||||||||||||||| ||||||    
T  44632704 taggtttaattgctattttcgtctcttaattaattttttggtatcgttttggt 44632756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 71887 - 71824
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    ||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||| ||||||    
T  71887 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccataactaaaa 71824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 70668 - 70732
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    |||||||||||||||||| || |||| |||||||||||||||||| |||||| ||||| ||||||    
T  70668 aggcttaattgctattttagtcccttaactaattttttggtatcggtttggtcccataactaaaa 70732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 123420 - 123480
Alignment:
Q  226 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||| |||||||| |||||    
T  123420 tttaggcttaattgctattttcgtcccttaactaatttcttggtattgctttggtcccata 123480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 134296 - 134356
Alignment:
Q  226 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||| |||||||| |||||    
T  134296 tttaggcttaattgctattttcgtcccttaactaatttcttggtattgctttggtcccata 134356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 129478 - 129421
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    ||||||||||| ||||||||| |||| ||| ||||||||||||| ||||||| |||||    
T  129478 aggcttaattgttattttcgtcccttaacttattttttggtatcactttggtcccata 129421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 309
Target Start/End: Original strand, 6241248 - 6241332
Alignment:
Q  225 atttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggt 309  Q
    |||||||||||||| ||||||||||||||| |||| || ||| ||||||||||||| || ||  ||||||||  |||||||||||    
T  6241248 atttaggcttaatttctattttcgttccttaactatttatttagtatcgctttggtcccttaattaaaatttattccgttttggt 6241332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 51597961 - 51598017
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||    
T  51597961 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccata 51598017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 51599491 - 51599443
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttg 278  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  51599491 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttg 51599443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 16963484 - 16963434
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 280  Q
    |||||||||| |||||||||||||| |||||||||||||||||| ||||||    
T  16963484 ggcttaattgttattttcgttccttaactaattttttggtatcgatttggt 16963434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 350
Target Start/End: Complemental strand, 6242756 - 6242633
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgt 326  Q
    ||||||||||| ||||||| | |||| |||||||  || ||||||||||||| || ||  ||||||||| ||||||||||||  |||| || || || ||    
T  6242756 aggcttaattgatattttcatcccttaactaattaattagtatcgctttggtcccttaattaaaatttgttccgttttggtattttaatttaattttcgt 6242657  T
Q  327 tacacattttggtcatttccgtta 350  Q
    |||||| |||||||  ||||||||    
T  6242656 tacacaatttggtcccttccgtta 6242633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 16962009 - 16962060
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 280  Q
    |||||||||||||||||| || |||| |||||||||||||||| ||||||||    
T  16962009 aggcttaattgctatttttgtcccttaactaattttttggtattgctttggt 16962060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 46015915 - 46015852
Alignment:
Q  230 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    |||||||||| |||||| || |||| | ||||||||||||||||||||||| ||||| ||||||    
T  46015915 ggcttaattgttattttagtcccttaagtaattttttggtatcgctttggtcccataactaaaa 46015852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 3569414 - 3569502
Alignment:
Q  268 gtatcgctttggttccatatctaaaatttgatccgttttggtat--taactttatctttgttacacattttggtcatttccgttagttt 354  Q
    |||||| ||||||||| ||  |||||||||||   |||||||||  ||| ||| ||| |||||||||||||||| ||||||||||||||    
T  3569414 gtatcgttttggttccttaattaaaatttgatatattttggtatcttaattttctctctgttacacattttggtaatttccgttagttt 3569502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 27209257 - 27209294
Alignment:
Q  317 ttatctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  27209257 ttatcttcgttacacattttggtcatttccgttagttt 27209294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 50682644 - 50682589
Alignment:
Q  231 gcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||||||||||||||| || |||| | || |||||||||||||||||||| |||||    
T  50682644 gcttaattgctattttggtcccttaattatttttttggtatcgctttggtcccata 50682589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 10654320 - 10654290
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  10654320 tgttacacattttggtcatttccgttagttt 10654290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 22584643 - 22584613
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  22584643 tgttacacattttggtcatttccgttagttt 22584613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 24590516 - 24590486
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  24590516 tgttacacattttggtcatttccgttagttt 24590486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 30611515 - 30611481
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||| |||||||||    
T  30611515 tctttgttacacattttggtcattttcgttagttt 30611481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Original strand, 42607617 - 42607647
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  42607617 tgttacacattttggtcatttccgttagttt 42607647  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 354
Target Start/End: Original strand, 50574609 - 50574639
Alignment:
Q  324 tgttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||||    
T  50574609 tgttacacattttggtcatttccgttagttt 50574639  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 29257113 - 29257084
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  29257113 gttacacattttggtcatttccgttagttt 29257084  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 32564240 - 32564211
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  32564240 gttacacattttggtcatttccgttagttt 32564211  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 33332175 - 33332240
Alignment:
Q  228 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    ||||||||||||||||||| ||  ||| |||| || |||||||||| |||||| ||||| ||||||    
T  33332175 taggcttaattgctattttagtctcttaactagttgtttggtatcggtttggtcccataactaaaa 33332240  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 33333467 - 33333414
Alignment:
Q  233 ttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 286  Q
    |||||||||||||| || |||| |||||||||||||||||  |||||| |||||    
T  33333467 ttaattgctattttagtcccttaactaattttttggtatcagtttggtcccata 33333414  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 37199211 - 37199182
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  37199211 gttacacattttggtcatttccgttagttt 37199182  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 46014699 - 46014764
Alignment:
Q  228 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    ||||||||||||||||||| ||   || ||||||||||||||||||||| | | ||||| ||||||    
T  46014699 taggcttaattgctattttagtcatttaactaattttttggtatcgcttcgatcccataactaaaa 46014764  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 46950026 - 46949997
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  46950026 gttacacattttggtcatttccgttagttt 46949997  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 51691912 - 51691999
Alignment:
Q  268 gtatcgctttggttccatatctaaaatttgatccgttttggt--attaactttatctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||| || ||  ||||||| ||||  |||||||  ||||||||  ||| | |||||||||||||||||||||||||||||    
T  51691912 gtatcgctttggtcccttaattaaaattcgatctattttggtccattaacttc-tctctattacacattttggtcatttccgttagttt 51691999  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 51810233 - 51810262
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  51810233 gttacacattttggtcatttccgttagttt 51810262  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 15073986 - 15073922
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    |||||||| ||||||||| ||||||| |||| ||  |||||||||||||||| || || ||||||    
T  15073986 aggcttaaatgctattttggttccttaactatttaattggtatcgctttggtcccttaactaaaa 15073922  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 19986411 - 19986383
Alignment:
Q  326 ttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||    
T  19986411 ttacacattttggtcatttccgttagttt 19986383  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 32517802 - 32517774
Alignment:
Q  326 ttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||    
T  32517802 ttacacattttggtcatttccgttagttt 32517774  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 34028814 - 34028846
Alignment:
Q  322 tttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||| |||||||||||||    
T  34028814 tttgttacacattttggtcctttccgttagttt 34028846  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 40534022 - 40534050
Alignment:
Q  326 ttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||    
T  40534022 ttacacattttggtcatttccgttagttt 40534050  T

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Target: scaffold0394 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 14267 - 14334
Alignment:
Q  227 ttaggcttaattgctattttcgttccttcactaa-ttttttggtatcgctttggttccatatctaaaa 293  Q
    |||||||||||||||||||| || |||| ||||| ||||||||||||| |||||| ||||| ||||||    
T  14267 ttaggcttaattgctattttagtcccttaactaatttttttggtatcggtttggtcccataactaaaa 14334  T

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Target: scaffold0194 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 19304 - 19240
Alignment:
Q  229 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 293  Q
    ||||||||||| || ||| ||||||| |||||||||||| ||||| |||||| ||||| ||||||    
T  19304 aggcttaattgttactttagttccttaactaattttttgatatcggtttggtcccataactaaaa 19240  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 93493 - 93450
Alignment:
Q  311 ttaactttatctttgttacacattttggtcatttccgttagttt 354  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||    
T  93493 ttaactttctcttcgttacacattttgatcatttccgttagttt 93450  T

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Target: scaffold0444 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 11759 - 11793
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||| |||||||||||||    
T  11759 tctttgttacacattttggtcctttccgttagttt 11793  T

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Target: scaffold0128 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 45131 - 45097
Alignment:
Q  320 tctttgttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||| |||||||||    
T  45131 tctttgttacacattttggtcattttcgttagttt 45097  T

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Target: scaffold0809 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 4434 - 4463
Alignment:
Q  325 gttacacattttggtcatttccgttagttt 354  Q
    ||||||||||||||||||||||||||||||    
T  4434 gttacacattttggtcatttccgttagttt 4463  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 65836 - 65864
Alignment:
Q  326 ttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||    
T  65836 ttacacattttggtcatttccgttagttt 65864  T

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Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 73168 - 73196
Alignment:
Q  326 ttacacattttggtcatttccgttagttt 354  Q
    |||||||||||||||||||||||||||||    
T  73168 ttacacattttggtcatttccgttagttt 73196  T

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