View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10079_low_10 (Length: 243)

Name: NF10079_low_10
Description: NF10079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10079_low_10
NF10079_low_10
[»] chr4 (3 HSPs)
chr4 (1-225)||(53557547-53557771)
chr4 (4-74)||(21174544-21174614)
chr4 (4-73)||(40254007-40254076)
[»] chr3 (3 HSPs)
chr3 (2-52)||(20740350-20740400)
chr3 (2-51)||(20732614-20732663)
chr3 (9-41)||(13993387-13993419)
[»] chr7 (3 HSPs)
chr7 (18-61)||(45675812-45675855)
chr7 (5-52)||(28944890-28944937)
chr7 (9-41)||(2461543-2461575)
[»] chr6 (1 HSPs)
chr6 (6-41)||(3616988-3617023)
[»] chr1 (2 HSPs)
chr1 (3-73)||(4686089-4686159)
chr1 (4-48)||(4609865-4609909)
[»] chr5 (1 HSPs)
chr5 (9-46)||(2591593-2591630)
[»] chr8 (1 HSPs)
chr8 (9-49)||(5948227-5948267)
[»] chr2 (1 HSPs)
chr2 (5-49)||(2892275-2892319)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 53557771 - 53557547
Alignment:
Q  1 atcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactgagcagcaataatggaccacctatagttatatagatgaaattaatttaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  53557771 atcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactgagcagcaataatggaccacctatagttatatagatacaattaatttaa 53557672  T
Q  101 ttagttgagaagaaaggattctaacatggtgagattctagtgacaaagaaaaaagacaaacagtagtatgttgtagagatggagaaatttgaggatagac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53557671 ttagttgagaagaaaggattctaacatggtgagattctagtgacaaagaaaaaagacaaacagtagtatgttgtagagatggagaaatttgaggatagac 53557572  T
Q  201 aaggacctgcttccaatgcttatgt 225  Q
    |||||||||||||||||||||||||    
T  53557571 aaggacctgcttccaatgcttatgt 53557547  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 21174614 - 21174544
Alignment:
Q  4 ttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactgagcagcaataatggaccaccta 74  Q
    |||||||||||||||| || || ||||||||||| || || ||||| ||||| || ||||| |||||||||    
T  21174614 ttgtgttccaatagttcttgatatcattgtctgtcctacctggtaattgagctgctataattgaccaccta 21174544  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 40254007 - 40254076
Alignment:
Q  4 ttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactgagcagcaataatggaccacct 73  Q
    |||||||||||||||| ||||| ||||| || |||| ||| ||||| || || || ||||||||||||||    
T  40254007 ttgtgttccaatagttctttatatcattatccgttcgtcctggtaattgcgctgctataatggaccacct 40254076  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 20740350 - 20740400
Alignment:
Q  2 tcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactg 52  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  20740350 tcttgtgttccagtagttctttatttcattgtctgttcttccaggtaactg 20740400  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 20732614 - 20732663
Alignment:
Q  2 tcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaact 51  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||||||||    
T  20732614 tcttgtgttccagtagttctttatttcattgtctgttcttccaggtaact 20732663  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 13993387 - 13993419
Alignment:
Q  9 ttccaatagttttttatgtcattgtctgttctt 41  Q
    |||||||||||||| ||||||||||||||||||    
T  13993387 ttccaatagtttttgatgtcattgtctgttctt 13993419  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 45675812 - 45675855
Alignment:
Q  18 ttttttatgtcattgtctgttcttccaggtaactgagcagcaat 61  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  45675812 ttttttatctcattgtctgttcttccaggtaactgagctgcaat 45675855  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 28944890 - 28944937
Alignment:
Q  5 tgtgttccaatagttttttatgtcattgtctgttcttccaggtaactg 52  Q
    |||||||||| |||| ||||| ||||||||||||||||| ||||||||    
T  28944890 tgtgttccaaaagttctttatctcattgtctgttcttccgggtaactg 28944937  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 2461575 - 2461543
Alignment:
Q  9 ttccaatagttttttatgtcattgtctgttctt 41  Q
    ||||||||||||||||||||||| |||||||||    
T  2461575 ttccaatagttttttatgtcattatctgttctt 2461543  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 3617023 - 3616988
Alignment:
Q  6 gtgttccaatagttttttatgtcattgtctgttctt 41  Q
    ||||||||||||||||||||||||||||||||||||    
T  3617023 gtgttccaatagttttttatgtcattgtctgttctt 3616988  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 4686159 - 4686089
Alignment:
Q  3 cttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactgagcagcaataatggaccacct 73  Q
    ||||| ||||||||||| ||||||||||| || |||||||| || || ||||| ||||| || ||||||||    
T  4686159 cttgtattccaatagttctttatgtcattatcagttcttcctggcaattgagctgcaattatcgaccacct 4686089  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 4609865 - 4609909
Alignment:
Q  4 ttgtgttccaatagttttttatgtcattgtctgttcttccaggta 48  Q
    ||||||||||||||||||| |  |||||||||||||| |||||||    
T  4609865 ttgtgttccaatagtttttcacatcattgtctgttctgccaggta 4609909  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 2591630 - 2591593
Alignment:
Q  9 ttccaatagttttttatgtcattgtctgttcttccagg 46  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  2591630 ttccaatagttttttatttcattgtctgttctaccagg 2591593  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 5948227 - 5948267
Alignment:
Q  9 ttccaatagttttttatgtcattgtctgttcttccaggtaa 49  Q
    |||||| |||||||||| ||||| |||||||||||||||||    
T  5948227 ttccaaaagttttttatctcattatctgttcttccaggtaa 5948267  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 2892275 - 2892319
Alignment:
Q  5 tgtgttccaatagttttttatgtcattgtctgttcttccaggtaa 49  Q
    ||||||||||||||||||||| |||||||| || ||||| |||||    
T  2892275 tgtgttccaatagttttttatttcattgtccgtccttcctggtaa 2892319  T

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