View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10079_low_13 (Length: 235)
Name: NF10079_low_13
Description: NF10079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10079_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 48755950 - 48755734
Alignment:
| Q |
16 |
cataaatgttactaaggcttatatatggtttattaatggatataatgcatattattagagtgaccttcattctaaataagtgtattataaagatttacag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
48755950 |
cataaatgttactaaggcttatatatggtttattaatggatataatgcatattattagagtgaccttcattctaaataagtgtattataaagatttatag |
48755851 |
T |
|
| Q |
116 |
atatattaagcaatggcttagttggagaaagcccaataattagagaaatcaatgacttagtgaattaaaatttctttatctaaaggcatcaacaggacat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
48755850 |
atatattaagcaatggcttagttggagaaagcccaataattagagaaatcaatgactaagtgaattaaaaattctttatccaaaggcatcaacaggacat |
48755751 |
T |
|
| Q |
216 |
caacaaatacagttcaa |
232 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
48755750 |
caacaaatacagttcaa |
48755734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University