View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10079_low_14 (Length: 229)
Name: NF10079_low_14
Description: NF10079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10079_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 27928144 - 27927927
Alignment:
| Q |
7 |
aatacataatataatattcaaggtacgcggttcaaacctcagccaccacaaaaaagaatgtgttgtgtgttggctttgataagaacaaagatctttgttg |
106 |
Q |
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| T |
27928144 |
aatacataataatatatgcaaggtccgggattcaaacctcagccaccgcaaaaaagaatgtgttgtgtgttggctttgataagaacaaagatctttgttg |
27928045 |
T |
|
| Q |
107 |
tgatgcattgagttctatctggctttgtgacgagcatccagtctttgacatttcataacannnnnnngtattaaacctacggttctcaagaaaaatccgg |
206 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | |
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| T |
27928044 |
tgatccattgagttctatctggctttgtgatcagcatccagtctttgacatttcataacattttttggtattaaacctacggttctcaagaacaatccag |
27927945 |
T |
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| Q |
207 |
ggttcggttggtagataa |
224 |
Q |
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|||||||||||||||||| |
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| T |
27927944 |
ggttcggttggtagataa |
27927927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 28055035 - 28055120
Alignment:
| Q |
139 |
agcatccagtctttgacatttcataacannnnnnngtattaaacctacggttctcaagaaaaatccggggttcggttggtagataa |
224 |
Q |
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| T |
28055035 |
agcatacagtctttgacttttcataacattttttggtattaaacctacggttctctggaaaaatccggggttcggttggtagataa |
28055120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 28085049 - 28085120
Alignment:
| Q |
84 |
gataagaacaaagatctttgttgtgatgcattgagttctatctggctttgtgacgagcatccagtctttgac |
155 |
Q |
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||||||||||||||||||| |||| ||||||||||||| |||||||||||| || ||||| ||||||||||| |
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| T |
28085049 |
gataagaacaaagatctttcttgtaatgcattgagttccatctggctttgtcactagcatacagtctttgac |
28085120 |
T |
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