View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10079_low_15 (Length: 227)
Name: NF10079_low_15
Description: NF10079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10079_low_15 |
 | |
|
| [»] chr6 (7 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 27927583 - 27927812
Alignment:
| Q |
1 |
attgaagcactccgtgtcctcgatatgtttcttcggaaggtagaatcctgaggttcatcagatcgttgtccatgtgtttctgacagaattggaatttcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27927583 |
attgaagcactccgtgtcctcgatatgtttcttcggaaggtagaatcctgaggttcatcagatcgttgtccatgtgtttctgacagaattggaatttcat |
27927682 |
T |
|
| Q |
101 |
ctttcccaaaatgattcatg---tttccttgaagattcagaaaaacatcaatatatttatctcggtaccatctcagcaattttaaaatgaaagaatccag |
197 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27927683 |
ctttcccaaaatgattcatgtaatttccttgaagattcagaaaaacgtcaatatatttatctcggtaccatctcagcaattttaaaatgaaagaatccag |
27927782 |
T |
|
| Q |
198 |
ttcaactcaactttaaaagggaaaatataa |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27927783 |
ttcaactcaactttaaaagggaaaatataa |
27927812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 28055469 - 28055235
Alignment:
| Q |
1 |
attgaagcactccgtgtcctcgatatgtttcttcggaaggtagaatcctgaggttcatcagatcgttgtccatgtgtttctgacagaattggaatttcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
28055469 |
attgaagcactccgtgtcctcgatatgtttcttcggaaggtagaatcctgaggttcatcagatcgttgtccatgtgtttctgatagaataggaatttcat |
28055370 |
T |
|
| Q |
101 |
ctttcccaaaatgattcatgtttccttgaagatt--------cagaaaaacatcaatatatttatctcggtaccatctcagcaattttaaaatgaaagaa |
192 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
28055369 |
ctttatcaaaatgattcatgtttccttcaagattctgtaagacagaaaaacatcaatatatttgtctatgtaccatctcagcaattttaaagtgaaagaa |
28055270 |
T |
|
| Q |
193 |
tccagttcaactcaactttaaaagggaaaatataa |
227 |
Q |
| |
|
|||| ||||||||||||| |||| || |||||||| |
|
|
| T |
28055269 |
tccaattcaactcaacttcaaaaagggaaatataa |
28055235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 28086068 - 28085834
Alignment:
| Q |
1 |
attgaagcactccgtgtcctcgatatgtttcttcggaaggtagaatcctgaggttcatcagatcgttgtccatgtgtttctgacagaattggaatttcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| ||||||||||||| || |||||||||| |
|
|
| T |
28086068 |
attgaagcactccgtgtcctcgatatgtttcttcgaaaggtagagtcctgagggtcatcagatcgttgtccacgtgtttctgacagtatcggaatttcat |
28085969 |
T |
|
| Q |
101 |
ctttcccaaaatgattcatgtttccttgaagatt--------cagaaaaacatcaatatatttatctcggtaccatctcagcaattttaaaatgaaagaa |
192 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28085968 |
ctttgtcaaaatgattcatgtttccttcaagattctgaaaaacagaaaaacatcagtatacgtgtctcggtaccatctcagcaattttaaaatgaaagaa |
28085869 |
T |
|
| Q |
193 |
tccagttcaactcaactttaaaagggaaaatataa |
227 |
Q |
| |
|
|||| |||| ||||| |||||||||| |||||||| |
|
|
| T |
28085868 |
tccaattcagctcaaatttaaaaggggaaatataa |
28085834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 28025694 - 28025560
Alignment:
| Q |
1 |
attgaagcactccgtgtcctcgatatgtttcttcggaaggtagaatcctgaggttcatcagatcgttgtccatgtgtttctgacagaattggaatttcat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
28025694 |
attgaagcacttcgtgtcctcgatatgtttcttcggaaggtagaatcctgaggttcatgagatcgttgaacatgtgtttctgacagaatcagaatttcat |
28025595 |
T |
|
| Q |
101 |
ctttcccaaaatgattcatgtttccttgaagattc |
135 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
28025594 |
ctttatcaaaatgattcatgtttccttgaagattc |
28025560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 27905336 - 27905209
Alignment:
| Q |
14 |
gtgtcctcgatatgtttcttcggaaggtagaatcctgaggttcatcagatcgttgtccatgtgtttctgacagaattggaatttcatctttcccaaaatg |
113 |
Q |
| |
|
||||||| |||||||| ||| ||||| |||||| || || |||||| ||||||||| |||||||||||||||| | | |||||||||||| ||||||| |
|
|
| T |
27905336 |
gtgtccttgatatgttcctttggaagttagaattctcagattcatcggatcgttgtggatgtgtttctgacagattcgtaatttcatctttttcaaaatg |
27905237 |
T |
|
| Q |
114 |
attcatgtttccttgaagattcagaaaa |
141 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |
|
|
| T |
27905236 |
attcatgtttccttgatgattctgaaaa |
27905209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 28010964 - 28010884
Alignment:
| Q |
61 |
gatcgttgtccatgtgtttctgacagaattggaatttcatctttcccaaaatgattcatgtttccttgaagattcagaaaa |
141 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||| ||||| || ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
28010964 |
gatcgttgtggatgtgtttctgacaaaatcggaatatcatcattttcaaaatgattcatgtttccttgatgattctgaaaa |
28010884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 27995471 - 27995341
Alignment:
| Q |
14 |
gtgtcctcgatatgtttcttcggaaggtagaatcctgaggttcatcagatcgttgtccatgtgtttctgacagaattggaatttcatctttcccaaaatg |
113 |
Q |
| |
|
|||||||||||||||| ||| ||||| | || |||||| | | || ||| ||||| | || ||||||| ||||| | |||||||||||| |||||| |
|
|
| T |
27995471 |
gtgtcctcgatatgttcctttggaagttggagtcctgatgctgctcggatggttgtggacgtttttctgaaagaatcgtaatttcatctttttcaaaatc |
27995372 |
T |
|
| Q |
114 |
attcatgtttccttgaagattcagaaaaaca |
144 |
Q |
| |
|
|||||||||| ||||| || || |||||||| |
|
|
| T |
27995371 |
attcatgttttcttgatgactctgaaaaaca |
27995341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 1434747 - 1434603
Alignment:
| Q |
1 |
attgaagcactccgtgtcctcgatatgtttcttcggaaggtagaatcctgaggttcatcagatcgttgtccatgtg---tttctgacagaattggaattt |
97 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||||||||| || || ||||||||||||||||||||| |
|
|
| T |
1434747 |
attgaagcacttggtgtgcttgatatgtttcttcggaaggtagaatcctgaggttcattagatcgttgtgcacatgtactttctgacagaattggaattt |
1434648 |
T |
|
| Q |
98 |
catctttcccaaaatgattcatgtttccttgaagattcagaaaaa |
142 |
Q |
| |
|
|| |||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
1434647 |
cacctttatcaaaatgattcatgtttcctagaagattctgaaaaa |
1434603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University