View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10079_low_2 (Length: 475)
Name: NF10079_low_2
Description: NF10079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10079_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 128 - 470
Target Start/End: Original strand, 53147821 - 53148161
Alignment:
| Q |
128 |
attttaatgcattttaagttaagtgtgggcatcgaaatcatagatcttccaaaaattgaattggatcctctagaattttcagagtgcacattcttcaact |
227 |
Q |
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| T |
53147821 |
attttaatgcattttaagttaagtgtgggcatcgatatcatagatcttccaaaaattgaattggatcctctagaattttcagagtgcacattcttcaact |
53147920 |
T |
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| Q |
228 |
tacttcaattatactgcaggattttataacctctgaatcgtcacgatttcaatcgtcgataatcaagacatagaaacagagataaacatgaacaatgaaa |
327 |
Q |
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| T |
53147921 |
tacttcaattatactgcaggattttataacctctgaatcgtcacgatttcaatcatcgataatcaagacatagaaacagagataaacatgaacaatgaaa |
53148020 |
T |
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| Q |
328 |
ttcaaaggatctagatatgaatcgaaattgaacgaagttaattaagcaaatgacattgtgagaatcaagaaacattcattaatctcaattgagtgatgag |
427 |
Q |
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| T |
53148021 |
ttcaacggatctagatatgaatcgaaattgaacgaagttaattaagcaaatgacattgtgagaatcaagaaa----cattaatctcaattgagtgatgag |
53148116 |
T |
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| Q |
428 |
aaacataaa--tttaccttgcaagcaatcacaattctctgcttct |
470 |
Q |
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| T |
53148117 |
aaacataaatttttaccttgcaagcaatcacaattctctgcttct |
53148161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 53147693 - 53147787
Alignment:
| Q |
22 |
gacgtatcactgatttttatttatttccgtatcatatcaatccctaaaatattttatcattacacaaaaaagtcacggaagcttcgttttatatca |
117 |
Q |
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| T |
53147693 |
gacgtatcactgatttt-atttatttccgtatcatatcaatccctaaaatattttatcattacacaaaaaagtcacggaagcttcgttttatatca |
53147787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 470
Target Start/End: Original strand, 11734137 - 11734169
Alignment:
| Q |
438 |
ttaccttgcaagcaatcacaattctctgcttct |
470 |
Q |
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| T |
11734137 |
ttaccttgcaagcaatcacaattctcagcttct |
11734169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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