View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10079_low_3 (Length: 417)
Name: NF10079_low_3
Description: NF10079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10079_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 40306996 - 40306596
Alignment:
| Q |
1 |
gcggtaccatctatcacaaccattagatatagtgttacttaattgtacgagtatgatttttctttttactggaacattcacctgtaacatggattataag |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40306996 |
gcggcaccatctatcacaaccattagatatagtgttacttaattgtacgagtatgatttttctttttactggaacattcacctgtaacatggattataag |
40306897 |
T |
|
| Q |
101 |
gttcaaatttgccaaatttcccnnnnnnnnagcccagctgccaaatttcatgataaccaataaaaattatgccttcgatctcaaggcctcgttcaaccta |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40306896 |
gttcaaatttgccaaatttcccttttttttagcccagctgccaaatttcatgataaccaataaaaattatgccttcgatctcaaggcctcattcaaccta |
40306797 |
T |
|
| Q |
201 |
ttgtcatttaacaccaacaaactcgttgcttcctttatgcgtatcccgtcatcctttgtttgtgcttatgagttgtgacattgggtgacagtgaagtttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40306796 |
ttgtcatttaacaccaacaaactcgttgcttcctttatgcgtatcccgtcatcctttgtttgtgcttatgagttgagacattgggtgacagtgaagtttt |
40306697 |
T |
|
| Q |
301 |
tgtcatgatttctaagcagataatccaactgactccctaaccacctatcggctattgttaggttgcagtgttggtggttagagattgattcatgtcaatg |
400 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40306696 |
tgtcatgatttcttagcagataatccaactgactccctaaccacctatcggctattgttaggttgcagtgttggtggttagagattgattcatgtcaatg |
40306597 |
T |
|
| Q |
401 |
t |
401 |
Q |
| |
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| |
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|
| T |
40306596 |
t |
40306596 |
T |
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