View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10079_low_4 (Length: 368)
Name: NF10079_low_4
Description: NF10079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10079_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 24067067 - 24066733
Alignment:
| Q |
19 |
gcttattgttttgatgttttttattcaggcacctaagaatttgatgacattggatgagatattatatgagtatatcagcttgaaaaatcataaggtgaca |
118 |
Q |
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| T |
24067067 |
gcttattgttttaatgttttttattcaggcacctaagaatttgatgacattggatgagatattatatgagtatatcagcctgaaaaatcataaggtgaca |
24066968 |
T |
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| Q |
119 |
atggatcaagaaatgtttatcatagaacaagagaaaaataggaatatgatgttattacaagggatgcataatgtcacggcggcttacattgccggtggaa |
218 |
Q |
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| T |
24066967 |
atggatcaagaaatgtttatcatagaacaagagaaaaataggaatatgatgttattacaagggatgcataatgtcacggcggcttacattgccggtggaa |
24066868 |
T |
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| Q |
219 |
actgtcccccacctgctgcaaaatcttctctcgagtttgttccgcaaacaagaattaataataaatcttatccaggtacatcctatatcgataattcatt |
318 |
Q |
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| T |
24066867 |
actgtcccccacctgctgcaaaatcttctcccgagtttgttctgcaaacaagaattaataataaatcttatccaggtacatcctatatcgataattcatt |
24066768 |
T |
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| Q |
319 |
ctattttatgttccaatatatatgcggttcctatg |
353 |
Q |
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| T |
24066767 |
ctatttcatgttccaatatatatgcggttcctatg |
24066733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 24066288 - 24066184
Alignment:
| Q |
53 |
aagaatttgatgacattggatgagatattatatgagtatatcagcttgaaaaatcataaggtgacaatggatcaagaaatgtttatcatagaacaagaga |
152 |
Q |
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|||| |||||| |||||||||||||| || ||| |||||| ||||||||| | |||||| | | ||||||||||||| |||||| ||| |||||||| |
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| T |
24066288 |
aagagtttgataacattggatgagatgttggatgcgtatattagcttgaaagagcataagattatgatggatcaagaaaagtttatgttagcacaagaga |
24066189 |
T |
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| Q |
153 |
aaaat |
157 |
Q |
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||||| |
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| T |
24066188 |
aaaat |
24066184 |
T |
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