View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10079_low_5 (Length: 345)
Name: NF10079_low_5
Description: NF10079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10079_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 345
Target Start/End: Complemental strand, 35114209 - 35113872
Alignment:
| Q |
14 |
tcattttattgattaaatagtattttagcggatactgcaatgtccatcttatgatcaatgaatattattagatcagtgtgcttgaatagtgtaatctata |
113 |
Q |
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| T |
35114209 |
tcattttattgattaaataggattttagcagatactgcaatgtccatcttatgatcaatgaatatta---gatcagtgtgcctgaatagtgtaatctata |
35114113 |
T |
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| Q |
114 |
gtcaaatggattcatcatagattgaaactatt---------catggaatggaatgatacattagaataaaatccttttaacatatgtttgatattaaggt |
204 |
Q |
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| T |
35114112 |
gtcaaatggattcctcatagattgcaactattgtaactattcatggaatggaatgatgcattagaataaaatccttttaacatatgtttggtattaaggt |
35114013 |
T |
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| Q |
205 |
ggatatgttaagatcgtgattccaaacatacacttaactttatacaaaaaggttgacctcctcttcactttctctataaacatatgatcggccacatata |
304 |
Q |
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| T |
35114012 |
ggatatgttaaaatcgtgatttcaaacatacacttaaccttatacaaaaaggttgacctcctctccactttctctataaacatatgatcagccacatatg |
35113913 |
T |
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| Q |
305 |
acgacgatctttggtgattgcatctaacttatctaaaattt |
345 |
Q |
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| T |
35113912 |
acgataacctttaatgattgcatctaatttatttaaaattt |
35113872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 47986456 - 47986533
Alignment:
| Q |
54 |
tgtccatcttatgatcaatgaatattattagatcagtgtgcttgaatagtgtaatctatagtcaaatggattcatcatagat |
135 |
Q |
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| T |
47986456 |
tgtccatcttatgatcaatgaata----tagattagtgtgcttgaataatacagtccatagtcaaatgcattcatgatagat |
47986533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 47986592 - 47986656
Alignment:
| Q |
244 |
ttatacaaaaaggttgacctcctcttcactttctctataaacatatgatcggccacatataacga |
308 |
Q |
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| T |
47986592 |
ttatacaaaaaggttgacctcctctccgctttctctatagatatatgtccgaccacatatgacga |
47986656 |
T |
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