View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10079_low_7 (Length: 327)
Name: NF10079_low_7
Description: NF10079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10079_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 7027699 - 7027399
Alignment:
| Q |
20 |
aaagtccttgcaataatattagtttatatctatatatacaattgagtgtgcacattagttagccaaaacatgtgctatcttcgatgtcttccggaagatt |
119 |
Q |
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| T |
7027699 |
aaagtccttgcaataatattagtttatatctatata--caattgagtatgcacattagttagccaaaacatgtgctatcttcgatgtcttccggaagatt |
7027602 |
T |
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| Q |
120 |
tcgcaggagtatcctcaacttagtcatgttttcatttcatcatgtcctctgtacaaataaatgatccagaaagacctcaaagctaacatcatccgtaaag |
219 |
Q |
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| T |
7027601 |
tcgcaggagtatcctcaacttagtcatgttttcatttcatcatgtcctctgtacaaataaatgatccagaaagacctcaaagctaacatcatccgtaaag |
7027502 |
T |
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| Q |
220 |
ataatatcgcctccagagagtgaagcttcaatggtatatgttgcagaacaatttaactataccagtagaagttgagcctgcacattatacacgaacacca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
7027501 |
ataatatcgcctccagagagtgaagcttcaatggtatatgttgcagaacgatttaactatactagtagaagttgagcctgcacattatacacgaacgcca |
7027402 |
T |
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| Q |
320 |
aac |
322 |
Q |
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||| |
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| T |
7027401 |
aac |
7027399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 303
Target Start/End: Complemental strand, 2977458 - 2977332
Alignment:
| Q |
177 |
taaatgatccagaaagacctcaaagctaacatcatccgtaaagataatatcgcctccagagagtgaagcttcaatggtatatgttgcagaacaatttaac |
276 |
Q |
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||||||||| || ||||| ||||||||||||||||||||||||||||| || ||||||| |||||||||||| || |||||||||||||| ||||||| |
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| T |
2977458 |
taaatgatcaaggaagacgtcaaagctaacatcatccgtaaagataatgtcccctccagggagtgaagcttcggtgttatatgttgcagaaggatttaac |
2977359 |
T |
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| Q |
277 |
tataccagtagaagttgagcctgcaca |
303 |
Q |
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| | | || |||| | ||||||||||| |
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| T |
2977358 |
tttgctagaagaaatcgagcctgcaca |
2977332 |
T |
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