View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10079_low_9 (Length: 255)
Name: NF10079_low_9
Description: NF10079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10079_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 7027405 - 7027156
Alignment:
| Q |
1 |
gccaaacatgtcgaagtctatgaaggtaaggtaacttgggatctatggcgatcacaaacaacaagataaggcacagtaaaatctctctttgattaataaa |
100 |
Q |
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| T |
7027405 |
gccaaacatgtcaaagtctatgaaggtgaggtaacttgggatctatggcgatcacaaacaacaagataaggcacagtaaaatctctctttgattaataaa |
7027306 |
T |
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| Q |
101 |
tatgcatcatcatgaggatctcgt---aactgagatatttgactcaaattaactgaactgacagtgtgaagataagatcatttgtaaagttgtcaattgc |
197 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7027305 |
tatgcatcatcatgaggatctcgtagcaactgagatatttgactcaaattaactgaactgacagtgtgaagataagatcatatgtaaagttgtcaattgc |
7027206 |
T |
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| Q |
198 |
cgatggccaaaactccgtcatataaacgtggaactttgacctatgctact |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7027205 |
cgatggccaaaactccgtcatataaacgtggaactttgacctatggtact |
7027156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 2977247 - 2977160
Alignment:
| Q |
37 |
tgggatctatggcgatcacaaacaacaagataaggcacagtaaaatctctctttgattaataaatatgcatcatcatgaggatctcgta |
125 |
Q |
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||||||| ||| ||||||||||||| || |||||||| ||| ||||||||| |||| ||||| || ||||||||||||| |||||| |
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| T |
2977247 |
tgggatccatgctgatcacaaacaaccaggcgaggcacaggaaa-tctctctttcattattaaatctgaatcatcatgaggagctcgta |
2977160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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