View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_high_12 (Length: 454)
Name: NF10080_high_12
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 21932816 - 21932421
Alignment:
| Q |
19 |
ctcttatcaaattgttaatggttatggtatcttttgctaagcaatggttnnnnnnngtgaaaaatattaagcataaacagaagatagacaacatgtgatt |
118 |
Q |
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| T |
21932816 |
ctcttatcaaattgttaatggttatggtatcttttgctaaacaatggttaaaagaagtgaaaaatattaagcataaacagaagatagacaacatgtgatt |
21932717 |
T |
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| Q |
119 |
agaagagtaattaaggataattatctttctggttagcatataataaagaaaatggttagagttcatcttatgttagtcacacaattttaggaggggtttc |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21932716 |
agaagagtaattaaggattattatctttctggttagcatataataaagaaaatggttagagttcatcttatgttagtcacacaattttaggaggggtttc |
21932617 |
T |
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| Q |
219 |
tgtttctcccactagttgaattcaaaggccaccctaagtaaagtttcttttcacattaatagataaatagtctacttttgttatttattggttgagtaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21932616 |
tgtttctcccactagttgaattcaaaggccaccctaagtaaagtttcttttcacattaatagataaatagtctacttttgttatttattggttgagtaat |
21932517 |
T |
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| Q |
319 |
tgacgcatagttaggtacaattaaatataatttattcataatgacactgaaacctcattctaagtgaaatgatacactcattccattccatctcat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
21932516 |
tgacgcatagttaggtacaattaaatataatttattcataatgacaatgaaacctcattctaagtaaaatgatacactcattccattccatttcat |
21932421 |
T |
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