View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_high_14 (Length: 451)
Name: NF10080_high_14
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Complemental strand, 37338910 - 37338485
Alignment:
| Q |
18 |
aattctggtccttgtttccatcacttgcttagtagtcgactgcgactgagatgcatttttcctcaatggagatttaaatgtaaatgaaatgacatccctg |
117 |
Q |
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| T |
37338910 |
aattctggtccttgtttccatcacttgcttagtagtcgactgcgactgagatgcatttttcctcaatggagatttaaatgtaaatgaaatgacatccctg |
37338811 |
T |
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| Q |
118 |
ctttctgtcatgctatatgcatcattgtaaatactttcatccattgtaacattacattttatagactttctatcatgagtattaactacattatcagaac |
217 |
Q |
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| T |
37338810 |
ctttctgtcatgctatatgcatcattgtaaatactttcatccattgtaacattacattttatagactttctatcatgagtattaactacattatcagaac |
37338711 |
T |
|
| Q |
218 |
ctcgtgcatcattctgatcacacctcttcttttcggaagaactctttcttttggatactgaaagctcctttggcttatcagttactcttgttctggactt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37338710 |
ctcgtgcatcattctgatcacacctcttcttttcggaagaactctttcttttggatactgaaagctccttttgcttatcagttactcttgttctggactt |
37338611 |
T |
|
| Q |
318 |
tttggattcatagtaagaatttacagcacatttgtttgtcgtcgtcctagctccggtcgaactttctgaagaacaggtttgtgttgacttattggtgtca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37338610 |
tttggattcatagtaagaatttacagcacatttgtttgtcgtcgtcctagctccggtcgaactttctgaagaacaggtttgtgttgacttattggtgtca |
37338511 |
T |
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| Q |
418 |
acttttgaagatgatttacctttgct |
443 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37338510 |
acttttgaagatgatttacctttgct |
37338485 |
T |
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