View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_high_17 (Length: 407)
Name: NF10080_high_17
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 54731014 - 54731406
Alignment:
| Q |
1 |
agtatacctatagaaataataatagtggacccttcagtccatgccatggctacttggctagtgctccttctcgtttaagtaatgagccagactttgatat |
100 |
Q |
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| T |
54731014 |
agtatacctatagaaataataatagtggacccttcagtccatgccatggctacttggctagtgctccttctcgtttaagtaatgagccagactttgatat |
54731113 |
T |
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| Q |
101 |
ttcatagtatcgaatcttgatcattctagaaccatattgataattgatccatgataaaactggacattaaatgtcattgtcacaagaaataattgaaaga |
200 |
Q |
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| T |
54731114 |
ttcatagtatcgaatcttgatcattctagaaccatattgataattgatccatgataaaactggacattaaatgtcattgtcacaagaaataattgaaaga |
54731213 |
T |
|
| Q |
201 |
tttttatatatattatgccagtgccagtacaggtatcaaaccttatattaacgactaacaaattaaatcacattaacaaattctaaagagcaaacgtaac |
300 |
Q |
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| T |
54731214 |
tttttatatatattatgccagtgccagtacaggtatcaaaccttatattaacgactaacaaattaaatcacattaacaaattctaaagagcaaacgtaac |
54731313 |
T |
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| Q |
301 |
aaattgaaagtgtccacatatgtatcaattgattaactctatcattgtatttcatgggtccattgaggacaaaaagttactgagggaccatga |
393 |
Q |
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| T |
54731314 |
aaattgaaagtgtccacatatgtatcaattgattaactctattattgtatttcatgggtccattgaggacaaaaagttactgagggaccatga |
54731406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 147 - 393
Target Start/End: Original strand, 5305244 - 5305486
Alignment:
| Q |
147 |
atccatgataaaactggacattaaatgtcattgtcacaagaaataattgaaagatttttatatatattatgccagtgccagtacaggtatcaaaccttat |
246 |
Q |
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| T |
5305244 |
atccatgataaaactggacattaaatgtcattgtcacaagaaataattgaaagatttttata----ttatgccagtgccagtacaggtatcaaaccttat |
5305339 |
T |
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| Q |
247 |
attaacgactaacaaattaaatcacattaacaaattctaaagagcaaacgtaacaaattgaaagtgtccacatatgtatcaattgattaactctatcatt |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5305340 |
attaacgactaacaaattaaatcacattaacaaattctaaagagcaaacgtaacaaattgaaagtgtccacatatgtatcaattgattaactctatcatt |
5305439 |
T |
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| Q |
347 |
gtatttcatgggtccattgaggacaaaaagttactgagggaccatga |
393 |
Q |
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| T |
5305440 |
gcatttcatgggtccattgaggacaaaaagttactgagggaccatga |
5305486 |
T |
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