View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_high_18 (Length: 389)
Name: NF10080_high_18
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 37860591 - 37860961
Alignment:
| Q |
19 |
agcaacactggtattgttgcaatatcacatgatgcagtacacaaatttaaactaacaatgtaaagaaccgtaccaagctgctgttagnnnnnnntagtga |
118 |
Q |
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| T |
37860591 |
agcaacactggtattgttgcaatatcacatgatgcagtacacaaatttaaactaacaatgtaaagaaccgtaccaagctgctgttagaaaaaaatagtga |
37860690 |
T |
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| Q |
119 |
taaaagaaacaataaagcacaaacaatgaaacactttgtttggttacaaagtccgcttacgtaagtctcccactagagctgttatagtttcgtactattg |
218 |
Q |
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| T |
37860691 |
taaaagaaacaataaagcacaaacaatgaaacactttgtttggttacaaagtccgcttacgtaagtctcccactagagctgttgtagttccgtactattg |
37860790 |
T |
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| Q |
219 |
ttaatgagtcggattatcatttactatgttgcaactcatacaaataatacagtccagaatactacaatacccctaaaccaccccacactcgtcacactcg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37860791 |
ttaatgagtcggattatcatttactatgttgcaactcatacaaataatacagtccagaatactacaatacccctaaaccaccccacactcgtcacactcg |
37860890 |
T |
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| Q |
319 |
ctcgtacatgcccacgccacatggaagagccaaactagttttttcatcggatgcatgcccttatttcttca |
389 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
37860891 |
ctcgtacatgcccactccacatggaagagccaaactagttttttcattggatacatgcccttatttcttca |
37860961 |
T |
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