View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10080_high_19 (Length: 382)
Name: NF10080_high_19
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_19 |
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| [»] chr7 (10 HSPs) |
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| [»] scaffold0060 (3 HSPs) |
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| [»] scaffold1769 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 8348643 - 8348258
Alignment:
| Q |
1 |
gaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattggtaatgaatatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8348643 |
gaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattggtaatgaatatg |
8348544 |
T |
|
| Q |
101 |
gctaccctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaactctacaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8348543 |
gctaccctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaactctacaat |
8348444 |
T |
|
| Q |
201 |
tc--gacagttgaaagaatgcacttgaaagaggttacgaataaactttcaaaaatgtggaatttcaact--tatcaggttaattttgttttggggcattc |
296 |
Q |
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|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8348443 |
tcgagacagttgaaagaatacacttgaaagaggttacgaataaactttcaaaaatgtggaatttcaacttatatcaggttaattttgttttggggcattc |
8348344 |
T |
|
| Q |
297 |
tataagttaaaagagataaaaacaattaaagagggcatgtcaagtgagaacaatttttattgtgagaaaagaacatattaatccat |
382 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8348343 |
tataagttaaaagagataaaaacaattaaagagggtatgtcaagtgagaacaatttttattgtgagaaaagaacatattaatccat |
8348258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 150 - 309
Target Start/End: Complemental strand, 8364505 - 8364347
Alignment:
| Q |
150 |
tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattcgacagttgaaagaatgcacttgaaagaggttacgaataaactttcaa |
249 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
8364505 |
tatgagttggtcttgagattttgaaatttagcatgttcggcactctacaattcgacagttgaaagaatacacttgatagaggttaagaataaactttcaa |
8364406 |
T |
|
| Q |
250 |
aaatgtggaatttcaacttatcaggttaattttgttttggggcattctataagttaaaag |
309 |
Q |
| |
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||| ||||| |||||||||||| ||| |||||||| ||| ||||||| ||||||||||| |
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| T |
8364405 |
aaa-ctggaacttcaacttatcatgtttattttgttatggagcattctgtaagttaaaag |
8364347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 98 - 309
Target Start/End: Original strand, 7915429 - 7915641
Alignment:
| Q |
98 |
atggctaccctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaactc--t |
195 |
Q |
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|||| |||| ||||||||||||||||||||||||| |||| ||||||| | ||||||||||||||||||||||||| |||||||||||| | |||| | |
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| T |
7915429 |
atggttaccttaacaggaacaactaatggagtgagaataaaaacttggaaggtatgagttggtcttgagattttgaaatttagcatgttctgcactctat |
7915528 |
T |
|
| Q |
196 |
acaattc--gacagttgaaagaatgcacttgaaagaggttacgaataaactttcaaaaatgtggaatttcaacttatcaggttaattttgttttggggca |
293 |
Q |
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||||||| |||| ||||||| || ||||||| |||||||| ||||||| || |||| ||||| |||| |||| ||| |||||| |||||||||||| |
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| T |
7915529 |
acaattcaagacaattgaaaggatacacttgatagaggttaagaataaattt---aaaaagtggactttctacttttcatattaattatgttttggggca |
7915625 |
T |
|
| Q |
294 |
ttctataagttaaaag |
309 |
Q |
| |
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||||||||||| |||| |
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|
| T |
7915626 |
ttctataagtttaaag |
7915641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 8409891 - 8409804
Alignment:
| Q |
1 |
gaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattgg |
89 |
Q |
| |
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||||||||||||||||||||||||||| ||| |||||||||| || | ||||||||||||| |||||||||||||||||||||||||| |
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| T |
8409891 |
gaagaaattgccagtggtctgtgatacgctgtttagtacaaag-gaagccaaataccggctatagcgatgctaaatttagcagcattgg |
8409804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 309
Target Start/End: Complemental strand, 8442710 - 8442554
Alignment:
| Q |
150 |
tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--gacagttgaaagaatgcacttgaaagaggttacgaataaacttt- |
246 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||||| || |||||| ||||| || |||||||||||| |||||| ||||| ||||||||| |
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| T |
8442710 |
tatgagttggtcttcagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagagg------ataaactttt |
8442617 |
T |
|
| Q |
247 |
caaaaatgtggaatttcaacttatcaggttaattttgttttggggcattctataagttaaaag |
309 |
Q |
| |
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| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |
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| T |
8442616 |
ccggaaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaag |
8442554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 7915315 - 7915371
Alignment:
| Q |
33 |
ttagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattgg |
89 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7915315 |
ttagtacaaaatcatgccaaataccggctatagcgatgctaaatttagcagcattgg |
7915371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 8338910 - 8338851
Alignment:
| Q |
320 |
aattaaagagggcatgtcaagtgagaacaat-ttttattgtgagaaaagaacatattaat |
378 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
8338910 |
aattaaatagggcatgtcaagtgagaacaatgttttattgtgagaaaataacatattaat |
8338851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8442813 - 8442755
Alignment:
| Q |
1 |
gaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccgg |
59 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||| |
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|
| T |
8442813 |
gaagaaatatccagtgttctatgatacactgtttagtacaaaatgatgtcaaataccgg |
8442755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 121
Target Start/End: Complemental strand, 8409762 - 8409728
Alignment:
| Q |
87 |
tggtaatgaatatggctaccctaacaggaacaact |
121 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8409762 |
tggtaatgaatatggttaccctaacaggaacaact |
8409728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 8345671 - 8345619
Alignment:
| Q |
320 |
aattaaagagggcatgtcaagtgagaacaat-ttttattgtgagaaaagaacat |
372 |
Q |
| |
|
||||||| |||||||||||||| |||||||| |||||||||||||||| ||||| |
|
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| T |
8345671 |
aattaaatagggcatgtcaagt-agaacaatgttttattgtgagaaaataacat |
8345619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 106 - 289
Target Start/End: Original strand, 65260 - 65443
Alignment:
| Q |
106 |
cctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--g |
203 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| |||||| | | | |||||||| ||||||||||||| | ||||||||| || ||||||||||| | |
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|
| T |
65260 |
cctaataggaacaactaatggagtgagattaaaaacttgaaaaaaa-gagttggttttgagattttgaaatatagcatgttaggcactctacaatttaag |
65358 |
T |
|
| Q |
204 |
acagttgaaagaatgcacttgaaagaggttacgaataaactttcaaaaatgtggaatttcaacttatcaggttaattttgttttgg |
289 |
Q |
| |
|
|||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
65359 |
acagttgaaagaataaacttgatagaggttaagaataaactttcaaaaa-ctggaatttcaacttatcatgttaattttgttttgg |
65443 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 150 - 309
Target Start/End: Original strand, 69243 - 69399
Alignment:
| Q |
150 |
tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--gacagttgaaagaatgcacttgaaagaggttacgaataaacttt- |
246 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || |||||| ||||| || |||||||||||| |||||| ||||| ||||||||| |
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| T |
69243 |
tatgagttggtcttgagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagagg------ataaactttt |
69336 |
T |
|
| Q |
247 |
caaaaatgtggaatttcaacttatcaggttaattttgttttggggcattctataagttaaaag |
309 |
Q |
| |
|
| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
69337 |
ctggaaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaag |
69399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 69161 - 69238
Alignment:
| Q |
12 |
cagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattgg |
89 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |
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|
| T |
69161 |
cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgatgctaaatttagcagcattgg |
69238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1769 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold1769
Description:
Target: scaffold1769; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 150 - 309
Target Start/End: Original strand, 322 - 478
Alignment:
| Q |
150 |
tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--gacagttgaaagaatgcacttgaaagaggttacgaataaacttt- |
246 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || |||||| ||||| || |||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
322 |
tatgagttggtcttgagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagagg------ataaactttt |
415 |
T |
|
| Q |
247 |
caaaaatgtggaatttcaacttatcaggttaattttgttttggggcattctataagttaaaag |
309 |
Q |
| |
|
|| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
416 |
caggaaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaag |
478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1769; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 230 - 277
Alignment:
| Q |
12 |
cagtggtctgtgatacactgattagtacaaaatgatgtcaaataccgg |
59 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
230 |
cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccgg |
277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 24857408 - 24857499
Alignment:
| Q |
108 |
taacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaactctacaa |
199 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||||| || |||||||||| |||||||||| |||| |||| || ||||||||| |
|
|
| T |
24857408 |
taacaggaacaactaatggagtgagaataaaaacatggcaggtaaaagttggtcttaagattttgaaaattagtctgttaggcactctacaa |
24857499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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