View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10080_high_2 (Length: 876)

Name: NF10080_high_2
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10080_high_2
NF10080_high_2
[»] chr5 (30 HSPs)
chr5 (290-837)||(25951444-25951994)
chr5 (290-626)||(20064131-20064465)
chr5 (290-617)||(23209785-23210110)
chr5 (290-584)||(20713358-20713650)
chr5 (290-626)||(20058301-20058636)
chr5 (290-614)||(20060990-20061311)
chr5 (34-138)||(20058802-20058906)
chr5 (19-138)||(25951157-25951276)
chr5 (164-267)||(25951302-25951404)
chr5 (290-618)||(21165328-21165645)
chr5 (34-138)||(20713087-20713191)
chr5 (20-138)||(20064631-20064748)
chr5 (165-267)||(23210150-23210252)
chr5 (47-138)||(20060733-20060824)
chr5 (177-267)||(19218022-19218112)
chr5 (165-267)||(20060848-20060950)
chr5 (165-267)||(20058676-20058778)
chr5 (170-267)||(20064505-20064602)
chr5 (173-267)||(20713224-20713318)
chr5 (177-267)||(24878397-24878487)
chr5 (62-138)||(23210277-23210353)
chr5 (579-626)||(19217728-19217775)
chr5 (208-267)||(23379415-23379474)
chr5 (332-378)||(17167169-17167215)
chr5 (194-252)||(17167317-17167375)
chr5 (290-351)||(23379314-23379375)
chr5 (294-361)||(19217912-19217979)
chr5 (177-243)||(19924021-19924087)
chr5 (332-378)||(23355833-23355879)
chr5 (405-478)||(20059787-20059858)
[»] chr3 (33 HSPs)
chr3 (290-626)||(9033146-9033483)
chr3 (290-513)||(7148920-7149141)
chr3 (332-625)||(16242605-16242896)
chr3 (294-443)||(15687085-15687233)
chr3 (34-138)||(7148650-7148754)
chr3 (170-270)||(16242976-16243076)
chr3 (290-614)||(24698739-24699063)
chr3 (297-420)||(29614467-29614590)
chr3 (170-252)||(7148783-7148865)
chr3 (170-260)||(29614644-29614734)
chr3 (547-626)||(15687340-15687419)
chr3 (177-267)||(13428752-13428842)
chr3 (194-267)||(26010940-26011013)
chr3 (546-626)||(4765354-4765434)
chr3 (34-138)||(29614764-29614868)
chr3 (19-117)||(9033672-9033769)
chr3 (519-626)||(29614038-29614146)
chr3 (201-267)||(23378548-23378614)
chr3 (73-116)||(16243117-16243160)
chr3 (177-267)||(24699103-24699191)
chr3 (328-426)||(4765557-4765653)
chr3 (327-420)||(4832388-4832480)
chr3 (177-243)||(4765755-4765825)
chr3 (194-267)||(4769823-4769896)
chr3 (173-262)||(9033528-9033617)
chr3 (347-416)||(13428588-13428656)
chr3 (547-614)||(4832190-4832258)
chr3 (203-262)||(15686976-15687035)
chr3 (19-109)||(15686785-15686873)
chr3 (327-375)||(23378692-23378740)
chr3 (34-64)||(16244334-16244364)
chr3 (177-267)||(27304426-27304516)
chr3 (47-112)||(24699265-24699330)
[»] chr6 (26 HSPs)
chr6 (290-617)||(31125821-31126150)
chr6 (170-586)||(1176918-1177356)
chr6 (290-626)||(16177434-16177758)
chr6 (290-616)||(32784207-32784534)
chr6 (290-535)||(15830152-15830395)
chr6 (167-267)||(16177294-16177394)
chr6 (47-131)||(31126336-31126420)
chr6 (19-119)||(32783947-32784046)
chr6 (34-119)||(16177150-16177235)
chr6 (165-267)||(15830010-15830112)
chr6 (196-262)||(22397602-22397668)
chr6 (547-626)||(22394102-22394179)
chr6 (24-119)||(1177416-1177511)
chr6 (337-420)||(17525058-17525140)
chr6 (194-267)||(18713767-18713840)
chr6 (545-626)||(17525267-17525348)
chr6 (358-443)||(22394286-22394370)
chr6 (204-267)||(17524907-17524970)
chr6 (177-267)||(14762959-14763049)
chr6 (327-401)||(17947742-17947815)
chr6 (47-109)||(25541175-25541237)
chr6 (194-267)||(17947892-17947965)
chr6 (338-413)||(14762796-14762869)
chr6 (194-258)||(13002834-13002900)
chr6 (77-111)||(22397761-22397795)
chr6 (221-267)||(31126190-31126236)
[»] chr2 (18 HSPs)
chr2 (316-626)||(18929484-18929794)
chr2 (309-619)||(26651081-26651392)
chr2 (290-420)||(19879031-19879162)
chr2 (194-267)||(26650948-26651021)
chr2 (34-119)||(19138997-19139081)
chr2 (201-267)||(17402838-17402904)
chr2 (195-263)||(25520443-25520511)
chr2 (327-413)||(17402982-17403065)
chr2 (177-267)||(18929327-18929417)
chr2 (194-267)||(31404073-31404147)
chr2 (50-112)||(24543754-24543816)
chr2 (545-625)||(17403199-17403279)
chr2 (47-111)||(18929189-18929253)
chr2 (309-412)||(24544060-24544161)
chr2 (43-109)||(20378891-20378957)
chr2 (47-112)||(20489520-20489585)
chr2 (177-260)||(24543911-24543994)
chr2 (337-378)||(29891164-29891205)
[»] chr7 (26 HSPs)
chr7 (290-495)||(24832589-24832792)
chr7 (337-626)||(4173105-4173392)
chr7 (290-626)||(20146033-20146369)
chr7 (294-625)||(14986744-14987070)
chr7 (294-625)||(15416355-15416681)
chr7 (19-138)||(24832306-24832424)
chr7 (309-439)||(2547149-2547278)
chr7 (165-267)||(4173480-4173582)
chr7 (19-119)||(31443456-31443555)
chr7 (547-626)||(2545771-2545850)
chr7 (19-106)||(14987282-14987368)
chr7 (19-106)||(15416893-15416979)
chr7 (177-267)||(20145903-20145993)
chr7 (196-267)||(17600641-17600712)
chr7 (165-263)||(24832448-24832546)
chr7 (194-267)||(14987114-14987187)
chr7 (194-267)||(15416725-15416798)
chr7 (202-267)||(2547024-2547089)
chr7 (31-112)||(20145749-20145830)
chr7 (43-126)||(4173616-4173699)
chr7 (334-418)||(2545555-2545640)
chr7 (47-110)||(2546864-2546927)
chr7 (547-597)||(2547389-2547439)
chr7 (209-262)||(10649265-10649318)
chr7 (343-420)||(17600806-17600882)
chr7 (194-262)||(3743492-3743560)
[»] scaffold0555 (3 HSPs)
scaffold0555 (316-620)||(5337-5641)
scaffold0555 (170-267)||(5708-5805)
scaffold0555 (19-119)||(5865-5964)
[»] scaffold0264 (2 HSPs)
scaffold0264 (289-416)||(21011-21138)
scaffold0264 (194-267)||(20900-20973)
[»] chr8 (23 HSPs)
chr8 (290-626)||(28371255-28371593)
chr8 (294-449)||(10661852-10662006)
chr8 (472-618)||(23539991-23540138)
chr8 (19-109)||(26136299-26136388)
chr8 (19-119)||(23540418-23540517)
chr8 (177-267)||(9218169-9218257)
chr8 (547-614)||(10662109-10662176)
chr8 (177-267)||(16600594-16600684)
chr8 (170-267)||(23540261-23540358)
chr8 (327-420)||(24577216-24577308)
chr8 (48-112)||(28370987-28371051)
chr8 (196-267)||(9286367-9286438)
chr8 (328-378)||(9218337-9218387)
chr8 (195-267)||(28371143-28371215)
chr8 (195-267)||(18672144-18672216)
chr8 (332-416)||(22713472-22713554)
chr8 (177-267)||(13110234-13110324)
chr8 (209-267)||(25095111-25095169)
chr8 (170-220)||(26136199-26136249)
chr8 (210-267)||(27123623-27123678)
chr8 (347-416)||(9286244-9286312)
chr8 (187-239)||(32352216-32352269)
chr8 (187-239)||(32368877-32368930)
[»] chr1 (20 HSPs)
chr1 (316-620)||(20146378-20146682)
chr1 (328-626)||(11013494-11013792)
chr1 (47-119)||(20146083-20146155)
chr1 (196-267)||(33103075-33103146)
chr1 (194-267)||(13202105-13202178)
chr1 (170-267)||(20146215-20146311)
chr1 (327-416)||(33103225-33103312)
chr1 (337-416)||(20866435-20866512)
chr1 (177-267)||(36571696-36571786)
chr1 (194-267)||(20150476-20150549)
chr1 (177-240)||(11013898-11013961)
chr1 (196-267)||(17615318-17615389)
chr1 (332-378)||(17615471-17615517)
chr1 (546-604)||(22619712-22619770)
chr1 (327-416)||(22607715-22607802)
chr1 (205-266)||(22607874-22607935)
chr1 (547-626)||(13232415-13232494)
chr1 (327-402)||(22619915-22619989)
chr1 (49-112)||(36571880-36571943)
chr1 (332-378)||(13201977-13202023)
[»] chr4 (8 HSPs)
chr4 (294-626)||(11361820-11362158)
chr4 (290-420)||(9409022-9409155)
chr4 (177-267)||(9409195-9409285)
chr4 (177-267)||(11361686-11361776)
chr4 (188-267)||(16675138-16675218)
chr4 (196-239)||(5358059-5358102)
chr4 (50-112)||(9409360-9409422)
chr4 (194-239)||(26654144-26654190)
[»] scaffold0795 (1 HSPs)
scaffold0795 (316-626)||(5726-6030)
[»] scaffold0161 (2 HSPs)
scaffold0161 (545-620)||(5313-5388)
scaffold0161 (330-394)||(5098-5162)
[»] scaffold0337 (1 HSPs)
scaffold0337 (194-251)||(17279-17336)
[»] scaffold0002 (3 HSPs)
scaffold0002 (328-416)||(374002-374088)
scaffold0002 (177-260)||(374172-374254)
scaffold0002 (547-610)||(373808-373869)
[»] scaffold0016 (2 HSPs)
scaffold0016 (208-267)||(12991-13050)
scaffold0016 (290-351)||(13090-13151)
[»] scaffold0142 (1 HSPs)
scaffold0142 (212-266)||(20617-20671)
[»] scaffold1102 (1 HSPs)
scaffold1102 (209-267)||(912-970)
[»] scaffold0039 (1 HSPs)
scaffold0039 (187-239)||(33270-33323)


Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 290 - 837
Target Start/End: Original strand, 25951444 - 25951994
Alignment:
Q  290 actattatttatacattggaaataagtggaaa-gaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttga 388  Q
    |||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25951444 actattatttatacatcggaaataagtggaaaagaaactaatctcacgatcaacactccttccatgtagacaaccgcttgtctcctacgtgctcctttga 25951543  T
Q  389 ggaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttc 488  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |||||| |||||||||||    
T  25951544 ggaaaccgcttctcctttgaaatttgaatctttcccgctccaaaggcagttgctttgacttcgacagctttgcttcttgctctgtatcttgtcgaacttc 25951643  T
Q  489 aatgcttcgaaacttttcacgctaaatacaacatttcgtcgaactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatgtt 588  Q
    |||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||    
T  25951644 aatgcttcgaaactcttcacgctaaatccaacatttcgttgaactcctttgattagagaaaagactttgattcgtgcaagagtaaaagtcaactaatgtt 25951743  T
Q  589 gaccacattaaatgaggctggtgaaaataccatctaaccatat--ctatgatgacaaaatatattaaacgcaaactagnnnnnnnncttctttataagtt 686  Q
    |||||||||||||||||||||||||||||||| ||||| || |  ||||||| ||||||||||||||| |||||||||        ||||||||||||||    
T  25951744 gaccacattaaatgaggctggtgaaaataccagctaacaatgtcactatgattacaaaatatattaaatgcaaactagttttttttcttctttataagtt 25951843  T
Q  687 aagagtgggtttaaacagtaaggagagactcatatatctcaaatcggttggtgtctccaagaaattcatatcctttgtcacccactcataatacatatta 786  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||    
T  25951844 aagagtgggtttaaacagtaaggagagactcagatatctcaaatcggttggtatcttcaagaaattcatatcctttgtcatccactcataatacatatta 25951943  T
Q  787 aaaatgggggaaagtatgtacaagatgggtgacaaaccgaaatcctcaaaa 837  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25951944 aaaatgggggaaagtatgtacaagatgggggacaaaccgaaatcctcaaaa 25951994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 290 - 626
Target Start/End: Complemental strand, 20064465 - 20064131
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgag 389  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| |||||| |||| || ||    
T  20064465 actattatttatacatagtaaataagtggaaagaaactaatcccacaatcagcacaccttccatgtagacaaccgcttatcttccacgttctcccttaag 20064366  T
Q  390 gaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttca 489  Q
    ||||  ||||||| ||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||||| || ||||| | ||||||||||    
T  20064365 gaaatcgcttctcttttgaaattcgaatctt-cccgcttcaaaggcagttgctt-gacttcgacggcttcgcttcttgtttcgtatcttatcgaacttca 20064268  T
Q  490 atgcttcgaaacttttcacgctaaatacaacatttcgtcgaactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatgttg 589  Q
    ||||||||| |||||| ||||||  | |||||| ||||||||||| |||||||  ||||||||||| |||||||||||||||||||  ||||| ||||||    
T  20064267 atgcttcgagactttttacgctaggtccaacatctcgtcgaactcttttgattgaagaaaagacttcgattcctgcaagagtaaaagtcaactgatgttg 20064168  T
Q  590 accacattaaatgaggctggtgaaaataccatctaac 626  Q
    ||||||||||| |||||||||||||||| || |||||    
T  20064167 accacattaaacgaggctggtgaaaataacagctaac 20064131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 290 - 617
Target Start/End: Complemental strand, 23210110 - 23209785
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgag 389  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| || || | |||||    
T  23210110 actattatttatacataggaaataagtggaaagaaactaatcccacgatcaacactccttccatttagacaaccgcttgtctcccatgttcttccttgag 23210011  T
Q  390 gaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttca 489  Q
    |||||  |||||| ||| ||||| |||||||| |||||||||||||| |||| ||||||| |||| ||| ||||||||||  ||  | ||||||||||||    
T  23210010 gaaaccacttctcttttaaaatttgaatcttt-ccgctccaaaggcaattgc-ttgacttcgacgactttgcttcttgctcggtcacttgtcgaacttca 23209913  T
Q  490 atgcttcgaaacttttcacgctaaatacaacatttcgtcgaactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatgttg 589  Q
    |||||| || ||| |  ||||||||| |||||| |||||||||||||||| ||  |||||| |||| |||||||||||||||||||  |||||| |||||    
T  23209912 atgctttgagactctctacgctaaatccaacatctcgtcgaactcctttgtttgaagaaaatacttcgattcctgcaagagtaaaagtcaactattgttg 23209813  T
Q  590 accacattaaatgaggctggtgaaaata 617  Q
    |||||||||| ||||||||||| |||||    
T  23209812 accacattaattgaggctggtgcaaata 23209785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 290 - 584
Target Start/End: Original strand, 20713358 - 20713650
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgag 389  Q
    |||||||||||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| |||||    
T  20713358 actattatttatacataggaaataagttgaaagaaactaatcccacgatcagcactccttccatgtagacaaccgcttgtctcccacgttctcccttgag 20713457  T
Q  390 gaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttca 489  Q
    ||||| ||||||| ||||||||||||||| |||| ||||||||||||||||| ||||| | ||| |||| |||||||||| |||||| |||||||| |||    
T  20713458 gaaaccgcttctcttttgaaattcgaatc-ttcctgctccaaaggcagttgc-ttgacatcgacagctttgcttcttgctctgtatcttgtcgaacctca 20713555  T
Q  490 atgcttcgaaacttttcacgctaaatacaacatttcgtcgaactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaa 584  Q
    | ||||  | |||||| ||||||| | ||| || |||||||||||||||||||  ||||||||||||||||||||||||| |||||  |||||||    
T  20713556 aagctttaagacttttaacgctaagtccaatatctcgtcgaactcctttgattgaagaaaagactttgattcctgcaagaataaaagtcaactaa 20713650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 290 - 626
Target Start/End: Complemental strand, 20058636 - 20058301
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaa-ctaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttga 388  Q
    ||||| |||||||||| |||| |||||||||| ||| |||||||||| |||| ||||||||||||| | ||||||||||||||||||||| |||| || |    
T  20058636 actatcatttatacataggaagtaagtggaaaaaaaactaatcccacgatcagcactccttccatgcaaacaaccgcttgtctcccacgttctcccttaa 20058537  T
Q  389 ggaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttc 488  Q
    |||||| |||| || |||||||||| ||| || | | |||||||||||||| ||| ||||| |||| |||||||||||| |   |||| |||||||||||    
T  20058536 ggaaaccgcttatcttttgaaattcaaatatt-cgctctccaaaggcagtttctt-gacttcgacgacttcgcttcttgttccatatcttgtcgaacttc 20058439  T
Q  489 aatgcttcgaaacttttcacgctaaatacaacatttcgtcgaactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatgtt 588  Q
    |||||||| | ||| || ||||||  | |||||| ||||||||||| |||||||  ||||||||||| |||||||||||||||||||  ||||||||  |    
T  20058438 aatgcttcaagactctttacgctaggtccaacatctcgtcgaactcttttgattgaagaaaagacttcgattcctgcaagagtaaaagtcaactaatact 20058339  T
Q  589 gaccacattaaatgaggctggtgaaaataccatctaac 626  Q
    ||||||||||||||||||||||||||||| || |||||    
T  20058338 gaccacattaaatgaggctggtgaaaatatcagctaac 20058301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 290 - 614
Target Start/End: Original strand, 20060990 - 20061311
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgag 389  Q
    ||||| |||||||||| |||| ||||| |||||||||||||||||| |||| ||||| || |||||| |||| |||||||||||||||| |||  || ||    
T  20060990 actatcatttatacataggaagtaagttgaaagaaactaatcccacgatcatcactcattacatgtacacaatcgcttgtctcccacgttctctcttaag 20061089  T
Q  390 gaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttca 489  Q
    |||||  ||| || |||||||||| |||| ||||| ||||||||||||||||  |||||| |||||||||| | |||||| |||||| |||| || ||||    
T  20061090 gaaaccacttatcttttgaaattcaaatc-ttccctctccaaaggcagttgc-atgacttcgacggcttcgttccttgctctgtatcatgtcaaatttca 20061187  T
Q  490 atgcttcgaaacttttcacgctaaatacaacatttcgtcgaactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatgttg 589  Q
    ||||||  | ||| || ||||||| | |||||| ||||||||| ||||| |||  |||||| |||| |||||||||||||||||||  ||||||||| ||    
T  20061188 atgcttttatactctttacgctaagtccaacatctcgtcgaacacctttcattgaagaaaa-acttcgattcctgcaagagtaaaagtcaactaatggtg 20061286  T
Q  590 accacattaaatgaggctggtgaaa 614  Q
    |||| |||||| |||||||||||||    
T  20061287 accatattaaacgaggctggtgaaa 20061311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 20058906 - 20058802
Alignment:
Q  34 tgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggttttaatgcattatgtttaa 133  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  20058906 tgcattttgttgttgtgcgttcatcgagttcgtaggtttcttaacgaacgggacgagaccgtgtggcgtgtttcgacaggttttaatgcattaagtttaa 20058807  T
Q  134 attgc 138  Q
    |||||    
T  20058806 attgc 20058802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 25951157 - 25951276
Alignment:
Q  19 cctaggacatgtttatgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggtttta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||| |||||| |||||||||||| |||| ||||||    
T  25951157 cctaggacatgtttatgcattttgttggtgtgcgttcatcgagttcgtatgttgcttaacgaacgggaagagaccatgtggcgtcttttgacaagtttta 25951256  T
Q  119 atgcattatgtttaaattgc 138  Q
    || ||||| |||||||||||    
T  25951257 atacattaagtttaaattgc 25951276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 164 - 267
Target Start/End: Original strand, 25951302 - 25951404
Alignment:
Q  164 ttacagatgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgtttta 263  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||  |||||||||| ||||||||||    
T  25951302 ttacagatgcaagtgcattaagagtaaaattggttcgacaaatcttttacatacattctttatgactcttttctctc-tgtcggtactttgagtgtttta 25951400  T
Q  264 gaat 267  Q
    ||||    
T  25951401 gaat 25951404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 290 - 618
Target Start/End: Original strand, 21165328 - 21165645
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgag 389  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||| |||| ||| ||| |||||||||||||  | ||| |||||||| || | |  ||    
T  21165328 actattatttatacataagaaataagtggaaagaaactaatcgcacgatcagcacgcctcccatgtagacaactacatgtttcccacgttcttcctatag 21165427  T
Q  390 gaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttca 489  Q
    |||||  |||||||||||||||| ||||||||| ||| |||||| |       ||||||| |||  |||||||||     |||| || ||| |||| | |    
T  21165428 gaaacctcttctcctttgaaatttgaatctttctcgcaccaaagac-------ttgacttcgactacttcgcttc-----ttgtttcttgttgaacctta 21165515  T
Q  490 atgcttcgaaacttttcacgctaa-atacaacatttcgtcgaactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatgtt 588  Q
    ||| ||||| ||| || || ||||    |||| | | |||||||||||||||||  || |||||||| | |||||||||||||||||  |||||||||||    
T  21165516 atgtttcgagactctttacactaagccccaacttcttgtcgaactcctttgattgaaggaaagacttcgcttcctgcaagagtaaaagtcaactaatgtt 21165615  T
Q  589 gaccacattaaatgaggctggtgaaaatac 618  Q
    ||||||||||| |||||||||| |||||||    
T  21165616 gaccacattaagtgaggctggtaaaaatac 21165645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 20713087 - 20713191
Alignment:
Q  34 tgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggttttaatgcattatgtttaa 133  Q
    |||||||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||  |||||||| ||||| ||||||    
T  20713087 tgcattttgttgttgtgcgttcatcgagttcgtagtttttttaacgaacgggacgagaccgtttggcgtctttcgacgagttttaatacattaagtttaa 20713186  T
Q  134 attgc 138  Q
    |||||    
T  20713187 attgc 20713191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 20064748 - 20064631
Alignment:
Q  20 ctaggacatgtttatgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggttttaa 119  Q
    ||||||||||||  |||||||| ||| |||||||||||||||||| ||| || |||||||||  |||||||||||||||||| ||| |||||||||||||    
T  20064748 ctaggacatgttg-tgcattttattgttgtgcgttcatcgagttcgtaggttgcttaacgaataggacgagaccgtgtggcgacttacgacaggttttaa 20064650  T
Q  120 tgcattatgtttaaattgc 138  Q
    ||||||| |||||||||||    
T  20064649 tgcattaagtttaaattgc 20064631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 23210252 - 23210150
Alignment:
Q  165 tacagatgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttag 264  Q
    |||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||| ||||||||||||| ||| |||||||| |||||||||||    
T  23210252 tacaaatgcaagtgcattaaaaataaaagtggttcgacaaatcctttacatacattctttaagactcttttctcttgcgccggtacttcgagtgttttag 23210153  T
Q  265 aat 267  Q
    |||    
T  23210152 aat 23210150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 20060733 - 20060824
Alignment:
Q  47 tgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggttttaatgcattatgtttaaattgc 138  Q
    |||| ||||||||||||| ||  || ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  20060733 tgtgtgttcatcgagttcgtaagttacttaacgaacgggacaagaccgtgtggcgtgtttcgacaggttttaatgcattaagtttaaattgc 20060824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 19218112 - 19218022
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| | ||||  ||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| ||||||||||||||    
T  19218112 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatggctcttttctctcgcgccggtactttgagtgttttagaat 19218022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 165 - 267
Target Start/End: Original strand, 20060848 - 20060950
Alignment:
Q  165 tacagatgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttag 264  Q
    |||| ||||||||||||||| | ||||  ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| ||  | ||||||||    
T  20060848 tacaaatgcaagtgcattaaaaataaaggtggttcgacaaatcctttacatacattgtttatgactcttttctcttgcgccggtagttcaaatgttttag 20060947  T
Q  265 aat 267  Q
    |||    
T  20060948 aat 20060950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 20058778 - 20058676
Alignment:
Q  165 tacagatgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttag 264  Q
    |||| |||||| |||||||| | ||||  ||||||||||||| ||||||||||||| |||||||||||||||||| |||   |||||| || ||||||||    
T  20058778 tacaaatgcaattgcattaaaaataaaggtggttcgacaaattctttacatacattctttatgactcttttctcttgcgctagtactttgaatgttttag 20058679  T
Q  265 aat 267  Q
    |||    
T  20058678 aat 20058676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 20064602 - 20064505
Alignment:
Q  170 atgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||||| | ||||  |||||| ||||||| |||||||||||| ||||| |||||||||||| ||  ||||||||  |||||||||||||    
T  20064602 atgcaagtgcattaaaaataaaggtggttcaacaaatcatttacatacattttttataactcttttctcttgcaccggtactttcagtgttttagaat 20064505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 20713224 - 20713318
Alignment:
Q  173 caagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||||||| | ||||  | |||| |||||||  ||||||||||| |||||||||||||||||| || |||||| || ||||||||||||||    
T  20713224 caagtgcattaaaaataaaggttgttcaacaaatctgttacatacattctttatgactcttttctcttgcatcggtatttcgagtgttttagaat 20713318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 24878397 - 24878487
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| | ||||  ||||| ||||||||||||||||| ||||  ||| |||||||||||||||||||||| || ||||||| ||||||    
T  24878397 tgcattaaaaataaaggtggtttgacaaatcctttacataaattacgtataactcttttctctcgcgtcggtaattcgagtgttgtagaat 24878487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 23210353 - 23210277
Alignment:
Q  62 ttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggttttaatgcattatgtttaaattgc 138  Q
    ||||||| || |||||||||||| |||||||| ||||||||||||||||| |||||||  ||||| ||| |||||||    
T  23210353 ttcataggttgcttaacgaacggaacgagaccatgtggcgtctttcgacatgttttaaaacattaagttgaaattgc 23210277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 579 - 626
Target Start/End: Complemental strand, 19217775 - 19217728
Alignment:
Q  579 aactaatgttgaccacattaaatgaggctggtgaaaataccatctaac 626  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  19217775 aactaatgttgaccacattaaatgaggctggtgaaattaccagctaac 19217728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 23379474 - 23379415
Alignment:
Q  208 ctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||| ||||||||||||||||||||||   |||||| ||||||||||||||    
T  23379474 ctttacatacattctttatgactcttttctctcgcgctagtacttcgagtgttttagaat 23379415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 17167215 - 17167169
Alignment:
Q  332 ccacaatcaacactccttccatgtagacaaccgcttgtctcccacgt 378  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  17167215 ccacaatcaacacttcttccatgtagacaaccacttgtctcccacgt 17167169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 17167375 - 17167317
Alignment:
Q  194 tggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtactt 252  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||||||  |||||||    
T  17167375 tggttcgacaaatcctttacatacattttgtattactcttttctctcgcgctggtactt 17167317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 23379375 - 23379314
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttcc 351  Q
    |||| ||||||||||| | ||||||| | ||||||||||||||||| |||||||||||||||    
T  23379375 actactatttatacatagaaaataagagtaaagaaactaatcccacgatcaacactccttcc 23379314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 19217979 - 19217912
Alignment:
Q  294 ttatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaa 361  Q
    ||||||||||||   |||||| |||||||||||||||||||| | || |||||||| |||||||||||    
T  19217979 ttatttatacataaaaaataactggaaagaaactaatcccacgaccagcactcctttcatgtagacaa 19217912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 19924087 - 19924021
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcg 243  Q
    |||||||| | ||||  |||||||||||||| |||| ||||||| | ||| ||||||||||||||||    
T  19924087 tgcattaaaaataaaggtggttcgacaaatcttttatatacattctgtataactcttttctctcgcg 19924021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 23355833 - 23355879
Alignment:
Q  332 ccacaatcaacactccttccatgtagacaaccgcttgtctcccacgt 378  Q
    |||| |||| |||| |||||||||||||||||| |||||||||||||    
T  23355833 ccacgatcatcacttcttccatgtagacaaccgtttgtctcccacgt 23355879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 478
Target Start/End: Original strand, 20059787 - 20059858
Alignment:
Q  405 ttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcct 478  Q
    ||||||||| |||||| ||  |||||||| ||||||||| ||||| |||||||||||||||||||  |||||||    
T  20059787 ttgaaattcaaatctt-ccttctccaaagacagttgctt-gacttcgacggcttcgcttcttgctccgtatcct 20059858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 9e-94; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 290 - 626
Target Start/End: Complemental strand, 9033483 - 9033146
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgag 389  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||||||    
T  9033483 actattatttatacataagaaataagtggaaagaaactaatcacacgatcaacactccctccatgtagacaaccgcttgtatcccacgttctcctttgag 9033384  T
Q  390 gaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttca 489  Q
    ||||| | ||||||||||||||| |||||||||||||||||||||||||||| ||||||   ||||| |||| ||||||| ||| || ||||||||||||    
T  9033383 gaaaccgattctcctttgaaatttgaatctttcccgctccaaaggcagttgc-ttgactacaacggcctcgcctcttgctatgtgtcttgtcgaacttca 9033285  T
Q  490 atgcttcgaaacttttcacgctaaatacaacatttcgtcg-aactcctttgatt-agagaaaagactttgattcctgcaagagtaaaaaacaactaatgt 587  Q
    ||||||||| ||| ||||| |||||| ||||||||||| | || |  ||| ||| ||  |||||||||  ||||||||||||||||||  ||||||||||    
T  9033284 atgcttcgagactcttcacactaaatccaacatttcgttgaaaatgtttttattgaggaaaaagacttcaattcctgcaagagtaaaagtcaactaatgt 9033185  T
Q  588 tgaccacattaaatgaggctggtgaaaataccatctaac 626  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  9033184 tgaccatattaaatgaggctggtgaaaataccagctaac 9033146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 290 - 513
Target Start/End: Original strand, 7148920 - 7149141
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgag 389  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| |||||    
T  7148920 actactatttatacataggaaataattggaaagaaactaatcccacgatcaacactccttccatgtagacaaccacttgtctcccacgttctcccttgag 7149019  T
Q  390 gaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttca 489  Q
    |||||  |||||| || |||||||||||| |||||||| || |||||||||| ||||||| ||||||||| ||||||  | ||| || |||||||| |||    
T  7149020 gaaaccacttctctttcgaaattcgaatc-ttcccgcttcagaggcagttgc-ttgacttcgacggcttcacttcttaatctgtgtcttgtcgaacctca 7149117  T
Q  490 atgcttcgaaacttttcacgctaa 513  Q
    | ||||  | |||||| |||||||    
T  7149118 aagctttaagactttttacgctaa 7149141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 332 - 625
Target Start/End: Complemental strand, 16242896 - 16242605
Alignment:
Q  332 ccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaatctttcccgctccaa 431  Q
    |||| ||||||||| |||||||||| ||||||||||||||| ||||| |||| |||||||||| ||||||| |||||||| || ||| |||||||| |||    
T  16242896 ccacgatcaacacttcttccatgtaaacaaccgcttgtctctcacgttctcccttgaggaaaccgcttctcttttgaaatccggatc-ttcccgcttcaa 16242798  T
Q  432 aggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttcaatgcttcgaaacttttcacgctaaatacaacatttcgtcgaa 531  Q
    ||| |||||| |||| ||  |||||||||| |||||||  ||||| |||| ||||||| ||||| || |||||  | || || | ||||| |||| ||||    
T  16242797 aggtagttgc-ttgaattctacggcttcgcctcttgctccgtatcttgtcaaacttcagtgctttgagacttt--atgccaagtccaacacttcgacgaa 16242701  T
Q  532 -ctcctttgattagagaaaagactttgattcctgcaagagtaaaaaac-aactaatgttgaccacattaaatgaggctggtgaaaataccatctaa 625  Q
     |||||||||||   |||||||||| | ||||||||| ||||| |  | ||||||||||||||||||||||||||| || ||||||||||| ||||    
T  16242700 tctcctttgattgaggaaaagacttcgcttcctgcaaaagtaacagtctaactaatgttgaccacattaaatgaggttgatgaaaataccagctaa 16242605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 294 - 443
Target Start/End: Original strand, 15687085 - 15687233
Alignment:
Q  294 ttatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaa 393  Q
    |||||||||||| | |||||| |||||||||||||||||||| |||| ||||||||| |||||| |||||||||||||||||||| |||| |||||||||    
T  15687085 ttatttatacatagaaaataactggaaagaaactaatcccacgatcatcactccttctatgtaggcaaccgcttgtctcccacgttctccattgaggaaa 15687184  T
Q  394 ctgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctt 443  Q
    | ||||||| ||||||||||||||| |||| ||| ||| |||||||||||    
T  15687185 ccgcttctcttttgaaattcgaatc-ttcctgcttcaatggcagttgctt 15687233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 7148650 - 7148754
Alignment:
Q  34 tgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggttttaatgcattatgtttaa 133  Q
    |||||||||||| |||||||||||||||||| ||| || ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||    
T  7148650 tgcattttgttgttgtgcgttcatcgagttcgtaggttgcttaacgaacgggacgagaccgtatggcatcttttgacaggttttaatgcattaagtttaa 7148749  T
Q  134 attgc 138  Q
    |||||    
T  7148750 attgc 7148754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 170 - 270
Target Start/End: Complemental strand, 16243076 - 16242976
Alignment:
Q  170 atgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaatcc 269  Q
    ||||||||||||||| | ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  16243076 atgcaagtgcattaaaaataaaagtggttcgacaaatgctttacatacattctttatgactcttttctctcgcgttggtacttcgagtgttttagaatcc 16242977  T
Q  270 t 270  Q
    |    
T  16242976 t 16242976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 290 - 614
Target Start/End: Complemental strand, 24699063 - 24698739
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgag 389  Q
    |||||||||||||||| | ||||||  | ||||||||||||| |||   ||||||||||||||||  |||||||||||||||| |||||  ||| |||||    
T  24699063 actattatttatacatagaaaataacggaaaagaaactaatcacacgtccaacactccttccatgg-gacaaccgcttgtctctcacgttttccattgag 24698965  T
Q  390 gaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttct-tgctttgtatcctgtcgaacttc 488  Q
    ||||| | ||||| ||||||||||||||| |||||||| ||||||||||||| ||||||| ||||  || || ||| ||  | || || |||||||| |     
T  24698964 gaaaccgattctcttttgaaattcgaatc-ttcccgcttcaaaggcagttgc-ttgacttcgacgattttgcatctctgactcgtgtcttgtcgaacctt 24698867  T
Q  489 aatgcttcga-aacttttcacgctaaatacaacatttcgtcg-aactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatg 586  Q
    || ||||  | | ||||||||||||| |  ||||| |||||| ||||||||   ||  |||||||||||  |||||| ||| |||||||  |||||||||    
T  24698866 aaggcttatagaccttttcacgctaagtctaacatctcgtcgaaactccttatgttgaagaaaagacttcaattcctccaatagtaaaagtcaactaatg 24698767  T
Q  587 ttgaccacattaaatgaggctggtgaaa 614  Q
    ||||| | ||||||||||| ||||||||    
T  24698766 ttgactaaattaaatgaggttggtgaaa 24698739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 297 - 420
Target Start/End: Complemental strand, 29614590 - 29614467
Alignment:
Q  297 tttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactg 396  Q
    ||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |||| |||||||||| |    
T  29614590 tttatacataggaaataaatgaaaagaaactaatcccacaatcagcactccttccatgtagacaactgcttgtcgcccacgttctccattgaggaaaccg 29614491  T
Q  397 cttctcctttgaaattcgaatctt 420  Q
     ||||| || ||| ||||||||||    
T  29614490 tttctctttagaagttcgaatctt 29614467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 7148783 - 7148865
Alignment:
Q  170 atgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtactt 252  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7148783 atgcaagtgcattaaaagtaaaagtggttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcggtactt 7148865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 29614734 - 29614644
Alignment:
Q  170 atgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgtt 260  Q
    ||||||||| ||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||    
T  29614734 atgcaagtgtattaaaaataaaggtggttcgacaaatcctttacatacattatttatgactcttttctcttgtgtcggtacttcgagtgtt 29614644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 547 - 626
Target Start/End: Original strand, 15687340 - 15687419
Alignment:
Q  547 aaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaaaataccatctaac 626  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  15687340 aaaagactttgattcctacaagagtaaaagtcaactaatgttgaccacattaaatgaggctggtgaacttaccagctaac 15687419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 13428842 - 13428752
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| | ||||  |||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||||    
T  13428842 tgcattaataataaatgtggttcaacaaatcctttacatacattctttattactcttttctctcacgtcggtacttcgagtgttttagaat 13428752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 26010940 - 26011013
Alignment:
Q  194 tggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||||||    
T  26010940 tggttcgacaaatcatttacatacattctttatgactctattctctcgcgccggtacttcgagtgttttagaat 26011013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 546 - 626
Target Start/End: Complemental strand, 4765434 - 4765354
Alignment:
Q  546 gaaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaaaataccatctaac 626  Q
    ||||| |||| |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  4765434 gaaaaaacttcgattcctgcaagagtaaaagtcaactaatgttgatcacattaaatgaggctggtgaaaattccaactaac 4765354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 29614868 - 29614764
Alignment:
Q  34 tgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggttttaatgcattatgtttaa 133  Q
    |||||||| ||| |||| |||||| |||||| ||| || |||||||||||||||||| ||||||||||||||| ||||||||||||   |||| ||||||    
T  29614868 tgcattttcttgttgtgtgttcattgagttcgtagtttgcttaacgaacgggacgagtccgtgtggcgtcttttgacaggttttaaaatattaagtttaa 29614769  T
Q  134 attgc 138  Q
    |||||    
T  29614768 attgc 29614764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 9033769 - 9033672
Alignment:
Q  19 cctaggacatgtttatgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggtttt 117  Q
    |||||||||||||  |||| |||||||||||||||||||| ||||| ||| ||  |||  |||||||| ||||||||||||||||||||||||||||||    
T  9033769 cctaggacatgttg-tgcaatttgttggtgtgcgttcatcaagttcgtaggttgtttatggaacgggatgagaccgtgtggcgtctttcgacaggtttt 9033672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 519 - 626
Target Start/End: Complemental strand, 29614146 - 29614038
Alignment:
Q  519 acatttcgtcgaactcctttgattagagaaaaga-ctttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaaaata 617  Q
    |||| |||||||||||||| | ||  |||||| | ||||||||| |||||||||||||  |||||||| ||||||||||||||||||||| |||||||||    
T  29614146 acatctcgtcgaactccttcgtttgaagaaaaaaactttgattcatgcaagagtaaaagtcaactaatattgaccacattaaatgaggctagtgaaaata 29614047  T
Q  618 ccatctaac 626  Q
     || |||||    
T  29614046 gcagctaac 29614038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 23378548 - 23378614
Alignment:
Q  201 acaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||||||||||||||||| |||||||||||||||||||| || ||||| |||| |||||||||    
T  23378548 acaaatcctttacatacattatgtatgactcttttctctcgcgccgatacttcgagtattttagaat 23378614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 16243160 - 16243117
Alignment:
Q  73 cttaacgaacgggacgagaccgtgtggcgtctttcgacaggttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  16243160 cttaacgaacgggacgagaccgtgtggcgtctttcgacaggttt 16243117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 24699191 - 24699103
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| | ||||  ||||||||||||||||||| ||||||| |||  || |||||||||||||| |||||||| ||||||||||||||    
T  24699191 tgcattaaaaataaaggtggttcgacaaatcctttaaatacattcttt--gattcttttctctcgcgccggtacttcgagtgttttagaat 24699103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 328 - 426
Target Start/End: Complemental strand, 4765653 - 4765557
Alignment:
Q  328 aatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaatctttcccgc 426  Q
    |||||||| ||| ||||| |||||||||||||||| |||||||||||| || |||| |||||||||   ||||| |||||||||||||||| |||||||    
T  4765653 aatcccacgatctacacttcttccatgtagacaactgcttgtctcccatgttctccattgaggaaatcacttct-ctttgaaattcgaatc-ttcccgc 4765557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 327 - 420
Target Start/End: Complemental strand, 4832480 - 4832388
Alignment:
Q  327 taatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaatctt 420  Q
    |||||||||||||| |||| |||||||  ||||||| | || | |||||||| ||||||||||||||| |||||| ||||||||||| ||||||    
T  4832480 taatcccacaatcatcacttcttccattgagacaactgtttttatcccacgttctcctttgaggaaaccgcttct-ctttgaaattcaaatctt 4832388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 4765825 - 4765755
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacatta----tttatgactcttttctctcgcg 243  Q
    |||||||| ||||||  |||||||||||||| |||||||||||||    ||||||||||||||||||||||    
T  4765825 tgcattaaaagtaaaggtggttcgacaaatcatttacatacattaattctttatgactcttttctctcgcg 4765755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 4769823 - 4769896
Alignment:
Q  194 tggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| |||| | ||||||||||| |||||||||||||||||| |||  |||| || ||||||||||||||    
T  4769823 tggttcgaaaaattcgttacatacattctttatgactcttttctcttgcgctggtatttcgagtgttttagaat 4769896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 9033617 - 9033528
Alignment:
Q  173 caagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgtttt 262  Q
    |||||||||||| | ||||  ||||| ||||||||||||||||||||| ||| ||||  |||||||| ||| || ||||| |||||||||    
T  9033617 caagtgcattaaaaataaaggtggtttgacaaatcctttacatacattctttgtgaccattttctcttgcgccgatacttcgagtgtttt 9033528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 13428656 - 13428588
Alignment:
Q  347 cttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaa 416  Q
    ||||||||||||||||| |||||||||||||| |||| |||||||||  | |||| ||||||||||||||    
T  13428656 cttccatgtagacaaccacttgtctcccacgttctccattgaggaaatcgtttct-ctttgaaattcgaa 13428588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 614
Target Start/End: Complemental strand, 4832258 - 4832190
Alignment:
Q  547 aaaagactttgattcctgcaagagtaaaaaa-caactaatgttgaccacattaaatgaggctggtgaaa 614  Q
    ||||||||| |||||||||||   ||||||  |||||||||||||||| ||||||||||||||||||||    
T  4832258 aaaagacttcgattcctgcaaagataaaaagtcaactaatgttgaccatattaaatgaggctggtgaaa 4832190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 15686976 - 15687035
Alignment:
Q  203 aaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgtttt 262  Q
    |||||| || |||||||| |||| |||||||||||||||||||||||||| |||| ||||    
T  15686976 aaatccatttcatacattctttaagactcttttctctcgcgtcggtacttcgagtatttt 15687035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 15686785 - 15686873
Alignment:
Q  19 cctaggacatgtttatgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcga 109  Q
    |||||||||||||  |||||||||||  ||||||| |||| ||||||||| || | | |||||| ||||||||||||||||||| ||||||    
T  15686785 cctaggacatgttg-tgcattttgttt-tgtgcgtccatcaagttcataggttgcgttacgaacaggacgagaccgtgtggcgtgtttcga 15686873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 23378692 - 23378740
Alignment:
Q  327 taatcccacaatcaacactccttccatgtagacaaccgcttgtctccca 375  Q
    ||||||||| | ||||||| |||||||||||||||||| ||||||||||    
T  23378692 taatcccacgaccaacacttcttccatgtagacaaccgtttgtctccca 23378740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 16244364 - 16244334
Alignment:
Q  34 tgcattttgttggtgtgcgttcatcgagttc 64  Q
    |||||||||||||||||||||||||||||||    
T  16244364 tgcattttgttggtgtgcgttcatcgagttc 16244334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 27304516 - 27304426
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| | ||||| ||||| ||||||| || |||||||||| | ||| | |||||||||||| | || ||||| ||||||| ||||||    
T  27304516 tgcattaaaaataaaagtggtttgacaaattctatacatacattttgtataattcttttctctcgagccgatactttgagtgttgtagaat 27304426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 24699330 - 24699265
Alignment:
Q  47 tgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacag 112  Q
    |||||||||||| ||||||||| ||  || |||||| |||||||||||||||   |||||||||||    
T  24699330 tgtgcgttcatcaagttcataggttgttttacgaacaggacgagaccgtgtgatatctttcgacag 24699265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 4e-62; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 290 - 617
Target Start/End: Complemental strand, 31126150 - 31125821
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgag 389  Q
    |||||||||||||||| ||||||||||||||||||||||||||||  || | |||||||||||||||||||| ||||||||||||||||  ||  |||||    
T  31126150 actattatttatacataggaaataagtggaaagaaactaatcccaagattagcactccttccatgtagacaatcgcttgtctcccacgttttctcttgag 31126051  T
Q  390 gaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttca 489  Q
    ||||| ||||||| ||||||||||||||| ||||| ||||||||||| |||| |||||||  |||||||||||||||||| | |||||| | ||||||||    
T  31126050 gaaaccgcttctcttttgaaattcgaatc-ttccctctccaaaggcaattgc-ttgacttatacggcttcgcttcttgctctatatcctattgaacttca 31125953  T
Q  490 atgcttcgaaacttttcacgctaaatacaacatttcgtcg-aactcctttgatt---agagaaaagactttgattcctgcaagagtaaaaaacaactaat 585  Q
    |||  || | ||| || | | | | | |||||||| |||| |||  || |||||   | | |||| ||||||||| ||| ||||||||||  ||||||||    
T  31125952 atgtatcaagactctttatgttgagtccaacattttgtcgaaacctctctgattgaaaaaaaaaatactttgatttctgtaagagtaaaagtcaactaat 31125853  T
Q  586 gttgaccacattaaatgaggctggtgaaaata 617  Q
    |||||||||||||||||||| |||||||||||    
T  31125852 gttgaccacattaaatgaggatggtgaaaata 31125821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 170 - 586
Target Start/End: Complemental strand, 1177356 - 1176918
Alignment:
Q  170 atgcaagtgcattaagagtaaaattggttcgacaaatcctttacatac----attatttatgactcttttctctcgcgtcggtacttagagtgttttaga 265  Q
    ||||||||||||||| | ||||  ||||||||||||||||||||||||    ||| ||||||||||||||||||||||   |||||| ||||||||||||    
T  1177356 atgcaagtgcattaaaaataaaggtggttcgacaaatcctttacatacatgtattctttatgactcttttctctcgcgctagtacttcgagtgttttaga 1177257  T
Q  266 atcctttacatagaattt--------tt----tatg----actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactcctt 349  Q
    || || || | |  ||||        ||    ||||    |||| ||||||||||| |||||||| || ||||||||||||| ||  ||||||||||| |    
T  1177256 attctgtatagatgatttgcgtcctgttttcctatgcaaaactactatttatacataggaaataaatgaaaagaaactaatctcatgatcaacactccct 1177157  T
Q  350 ccatg----tagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttg 445  Q
    |||||    |||||||||||||||||||||||| |||| |||||||||| | ||||| ||||||||||||||| |||||||| ||||||||||||| |||    
T  1177156 ccatgtacatagacaaccgcttgtctcccacgttctcccttgaggaaaccgtttctcttttgaaattcgaatc-ttcccgcttcaaaggcagttgc-ttg 1177059  T
Q  446 actttgacggcttcgcttcttgctttgtatcctgtcgaacttcaatgcttcgaaacttttcacgctaaatacaacatttcgtcgaactcctttgattaga 545  Q
    |||| || |||||||  ||||||| |||||| ||||||||||||| |||| || |||| | |  |||||| |||||| |||| |||||||||| |||  |    
T  1177058 acttcgatggcttcgtctcttgctctgtatcttgtcgaacttcaaagctttgagacttcttatactaaatccaacatctcgttgaactccttttattgaa 1176959  T
Q  546 gaaaagactttgattcctgcaagagtaaaaaacaactaatg 586  Q
    ||||||| || |||||||||||||||||||  |||||||||    
T  1176958 gaaaagatttcgattcctgcaagagtaaaagtcaactaatg 1176918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 290 - 626
Target Start/End: Original strand, 16177434 - 16177758
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgag 389  Q
    |||| ||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||||    
T  16177434 actaatatttatacatagaaaataagtggaaagaaactaatcccacaatcagcactccttccatgtagacaaccgcttgtctcccacgttgtcccttgag 16177533  T
Q  390 gaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttca 489  Q
     |||| ||||||| ||||||||| ||||| |||||||| |||||| |||||| ||||||| ||||  || || ||||| | | |||| ||||||||||||    
T  16177534 aaaaccgcttctcttttgaaatttgaatc-ttcccgcttcaaaggaagttgc-ttgacttcgacgagtttgcctcttgatctatatcttgtcgaacttca 16177631  T
Q  490 atgcttcgaa-acttttcacgctaaatacaacatttcgtcgaactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatgtt 588  Q
    || |||  || |||||| | ||||| | |||||| |||||||              ||||||||||||||||||| |||||||||||  |||||||||||    
T  16177632 atacttttaagactttttatgctaagtccaacatctcgtcga--------------agaaaagactttgattcctacaagagtaaaagtcaactaatgtt 16177717  T
Q  589 gaccacattaaatgaggct---ggtgaaaataccatctaac 626  Q
     ||||||||||||||||||   ||||||||||||| |||||    
T  16177718 aaccacattaaatgaggctggaggtgaaaataccagctaac 16177758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 290 - 616
Target Start/End: Original strand, 32784207 - 32784534
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaact-aatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttga 388  Q
    |||||||||||||||| ||||||||||||| ||||| | ||| ||||||||| ||||| ||||||||||||||| ||||||||| ||||| |||| ||||    
T  32784207 actattatttatacataggaaataagtggatagaaaattaatgccacaatcagcactctttccatgtagacaactgcttgtctcacacgttctccattga 32784306  T
Q  389 ggaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttc 488  Q
    |||||| ||||||| |||||||||| |||| |||||||| |||||||| |||| ||||||   ||| |||||||||| |||  || || |||||||| ||    
T  32784307 ggaaaccgcttctcttttgaaattcaaatc-ttcccgcttcaaaggcaattgc-ttgactccaacgacttcgcttctcgctccgtttcttgtcgaacctc 32784404  T
Q  489 aatgcttcgaaacttttcacgctaa-atacaacatttcgtcgaactcctttgattagag-aaaagactttgattcctgcaagagtaaaaaacaactaatg 586  Q
    | |||||||| ||| || |||||||    |||||| | |||||||||| ||||||  || |||||| ||  ||||||| || |||||||  ||||||||     
T  32784405 agtgcttcgagactctttacgctaagccccaacatcttgtcgaactccattgattgtagaaaaagatttcaattcctgtaaaagtaaaagtcaactaata 32784504  T
Q  587 ttgaccacattaaatgaggctggtgaaaat 616  Q
    || ||||||||||||||| ||| |||||||    
T  32784505 ttaaccacattaaatgagactgatgaaaat 32784534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 290 - 535
Target Start/End: Original strand, 15830152 - 15830395
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgag 389  Q
    |||||||||||||||| | |||||||||||||||||||||||||| ||| | ||||| ||||||||||||||| | |||||||||| || |||| || ||    
T  15830152 actattatttatacatagaaaataagtggaaagaaactaatcccataattagcactctttccatgtagacaactgtttgtctcccatgttctccctttag 15830251  T
Q  390 gaaactgcttc-tcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttc 488  Q
    ||||| ||||| |  ||||||||||||||| ||||||||||||||||   ||| || |||| ||||||||| ||||||  || ||||| |||||||||||    
T  15830252 gaaaccgcttctttttttgaaattcgaatc-ttcccgctccaaaggccaatgc-ttaacttcgacggcttcacttcttatttcgtatcttgtcgaacttc 15830349  T
Q  489 aatgcttcgaaacttttcacgctaaatacaacatttcgtcgaactcc 535  Q
    || ||||  | |||||| ||||||| | |||||| ||| ||||||||    
T  15830350 aaggctttaagactttt-acgctaagttcaacatctcgacgaactcc 15830395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 16177294 - 16177394
Alignment:
Q  167 cagatgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaa 266  Q
    |||||||||||||||||| | ||||  |||||||| |||||||||||||||||| ||||||||||||||||||   || ||||||| |||||||||||||    
T  16177294 cagatgcaagtgcattaaaaataaatgtggttcgaaaaatcctttacatacattctttatgactcttttctcttatgttggtacttcgagtgttttagaa 16177393  T
Q  267 t 267  Q
    |    
T  16177394 t 16177394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 31126420 - 31126336
Alignment:
Q  47 tgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggttttaatgcattatgttt 131  Q
    |||||||||||||||||| ||| || |||||||||| |||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  31126420 tgtgcgttcatcgagttcgtaggttgcttaacgaactggacaagaccgtgtggcgtctttcgataggttttaatgcattaagttt 31126336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 32783947 - 32784046
Alignment:
Q  19 cctaggacatgtttatgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggtttta 118  Q
    |||||||||||||  |||||||||||| ||||||||||| |||||| ||| ||  |||||||||||||||| |||||||| |||||||||||||||||||    
T  32783947 cctaggacatgttg-tgcattttgttgttgtgcgttcattgagttcgtaggttgtttaacgaacgggacgataccgtgtgtcgtctttcgacaggtttta 32784045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 16177150 - 16177235
Alignment:
Q  34 tgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggttttaa 119  Q
    |||||| | ||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||| |||||||||||    
T  16177150 tgcattatcttgttgtgcgttcatcgagttcataggttgcttaacgaacgagacgagaccgtgtggtgtctttcaacaggttttaa 16177235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 165 - 267
Target Start/End: Original strand, 15830010 - 15830112
Alignment:
Q  165 tacagatgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttag 264  Q
    |||| |||||||||| |||| | ||||| || ||||||||||| |||||||||||||||||||||||||||||||| |   | ||||| |||||||||||    
T  15830010 tacaaatgcaagtgcgttaaaaataaaagtgattcgacaaatcttttacatacattatttatgactcttttctctcacactgatactttgagtgttttag 15830109  T
Q  265 aat 267  Q
    |||    
T  15830110 aat 15830112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 22397668 - 22397602
Alignment:
Q  196 gttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgtttt 262  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |||||||||    
T  22397668 gttcgacaaatcctttacatacattctttatgactattttctctcgcgccggtacttcgagtgtttt 22397602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 547 - 626
Target Start/End: Complemental strand, 22394179 - 22394102
Alignment:
Q  547 aaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaaaataccatctaac 626  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||  |||||||||||| ||||| |||||    
T  22394179 aaaagactttgattcctgcaagagtaaaacggaactaatgttgaccacattaaa--aggctggtgaaattaccaactaac 22394102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 1177511 - 1177416
Alignment:
Q  24 gacatgtttatgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggttttaa 119  Q
    ||||||||| || ||| ||||| |||| ||| ||||||||| ||| ||  ||||| |||||||| |||||||||||||||||||||||||||||||    
T  1177511 gacatgtttgtgaattctgttgttgtgtgtttatcgagttcgtaggttgtttaacaaacgggacaagaccgtgtggcgtctttcgacaggttttaa 1177416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 17525058 - 17525140
Alignment:
Q  337 atcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaatctt 420  Q
    ||||||||| |||||||||||||||||||||||||||||||| || | | ||| |||| |||||| ||||||||||||||||||    
T  17525058 atcaacacttcttccatgtagacaaccgcttgtctcccacgttcttcatagagtaaaccgcttct-ctttgaaattcgaatctt 17525140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 18713767 - 18713840
Alignment:
Q  194 tggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||||| | |||||||| ||||||| ||||||    
T  18713767 tggttcgacaaatcctttacatacattctgtataactcttttctctcgtgacggtactttgagtgttatagaat 18713840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 626
Target Start/End: Original strand, 17525267 - 17525348
Alignment:
Q  545 agaaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaaaataccatctaac 626  Q
    ||||||| ||| |||||||  | ||||||||  ||||||||||||||||||||||||||| ||||||||| ||||| |||||    
T  17525267 agaaaaggcttcgattcctagaggagtaaaagtcaactaatgttgaccacattaaatgagactggtgaaattaccagctaac 17525348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 358 - 443
Target Start/End: Complemental strand, 22394370 - 22394286
Alignment:
Q  358 acaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctt 443  Q
    ||||||||||||||||||||| |||| |||| ||||| | ||||| ||| || |||||||| |||||||| |||||||| ||||||    
T  22394370 acaaccgcttgtctcccacgttctccattgacgaaaccgtttctctttttaagttcgaatc-ttcccgcttcaaaggcatttgctt 22394286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 17524907 - 17524970
Alignment:
Q  204 aatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||| ||||||| ||||||||||||||||||| || | | |||| ||||||||||||||    
T  17524907 aatcctttaaatacattctttatgactcttttctctcacgccagcacttcgagtgttttagaat 17524970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 14763049 - 14762959
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| | ||||  |||||||| || ||||||||||||||| | ||| |||||||||||||| ||| |||||| ||||| | ||||||    
T  14763049 tgcattaaaaataaaggtggttcgagaactcctttacatacattctgtataactcttttctctcgtgtcagtacttcgagtgatgtagaat 14762959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 327 - 401
Target Start/End: Complemental strand, 17947815 - 17947742
Alignment:
Q  327 taatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttct 401  Q
    ||||||||  ||||||||| |||| |||||||| ||||||||||||||| ||  ||| |||||||||||||||||    
T  17947815 taatcccatcatcaacacttcttctatgtagactaccgcttgtctcccatgt-ttccattgaggaaactgcttct 17947742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 25541175 - 25541237
Alignment:
Q  47 tgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcga 109  Q
    |||||||||||| ||||  ||| || |||| ||||| ||||||||||||||||||||||||||    
T  25541175 tgtgcgttcatcaagtttgtaggttgcttagcgaacaggacgagaccgtgtggcgtctttcga 25541237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 17947965 - 17947892
Alignment:
Q  194 tggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||||||||||||||||| | ||| ||||||| |||| ||| || ||||| || |||| ||||||    
T  17947965 tggttcgacaaatcctttacatacattttatataactctttcctcttgcgccgttacttcgaatgttgtagaat 17947892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 14762869 - 14762796
Alignment:
Q  338 tcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattc 413  Q
    |||||||| | ||||| | ||||||||||||||||||||||  ||| |||||||||| |||||| |||||||||||    
T  14762869 tcaacacttcctccatttggacaaccgcttgtctcccacgt-ttcccttgaggaaaccgcttct-ctttgaaattc 14762796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 13002900 - 13002834
Alignment:
Q  194 tggttcgacaaatcc-tttacatacattatttatgactcttttctctcg-cgtcggtacttagagtg 258  Q
    ||||||||||||||  |||||||||||| | |||||||||||||||| | ||||||||||| |||||    
T  13002900 tggttcgacaaatcagtttacatacattctgtatgactcttttctctagacgtcggtacttcgagtg 13002834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 22397795 - 22397761
Alignment:
Q  77 acgaacgggacgagaccgtgtggcgtctttcgaca 111  Q
    |||||| ||||||||||||||||||||||||||||    
T  22397795 acgaacaggacgagaccgtgtggcgtctttcgaca 22397761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 31126236 - 31126190
Alignment:
Q  221 atttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||||||||| |||| | ||||| ||||||||||||||    
T  31126236 atttatgactcttttctcttgcgttgttacttcgagtgttttagaat 31126190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 2e-61; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 316 - 626
Target Start/End: Original strand, 18929484 - 18929794
Alignment:
Q  316 tggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcga 415  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| | ||||||||||||    
T  18929484 tggaaagaaactaatcccacgatcaacactccttccatgtagacaaccgcttgtctcccacgttctcctttgaggaaaccacttcacttttgaaattcga 18929583  T
Q  416 atctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttcaatgcttcgaaactttt-cacgctaaa 514  Q
    ||||| |||| | ||||||||||||||| |||||  |  | || ||||||||  | ||||| |||||||||| || | ||||| |||||| || |||||     
T  18929584 atctt-cccggttcaaaggcagttgctt-gacttcaattgttttgcttcttgactcgtatcttgtcgaactttaaggattcgagactttttcatgctaag 18929681  T
Q  515 tacaacatttcgtcgaa-ctcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaa 613  Q
    | ||| || | |||||| ||||||| |||   ||||| ||||  ||||||||||||||||||  ||||||||||| |||||||||||||||| |||||||    
T  18929682 tccaaaatcttgtcgaaactcctttaattgaggaaaatacttcaattcctgcaagagtaaaagtcaactaatgttcaccacattaaatgaggttggtgaa 18929781  T
Q  614 aataccatctaac 626  Q
    ||||||| |||||    
T  18929782 aataccagctaac 18929794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 309 - 619
Target Start/End: Original strand, 26651081 - 26651392
Alignment:
Q  309 aaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttga 408  Q
    |||||| | ||||||||| |||||||| || | ||||| ||||||||||||||| |||||| | |||| | |||| |||||||||||||||||| |||||    
T  26651081 aaataactagaaagaaaccaatcccacgattagcactcattccatgtagacaactgcttgtgttccacattctccattgaggaaactgcttctcttttga 26651180  T
Q  409 aattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgc-ttcttgctttgtatcctgtcgaacttcaatgcttcgaaac-ttttc 506  Q
    ||||||||||||| ||||| |||||| |||||| ||||||| ||||| || || ||| ||  | || || |||||||| | || ||||  |||| |||||    
T  26651181 aattcgaatcttt-ccgcttcaaaggtagttgc-ttgacttcgacggttttgcattcctgactcgtgtcttgtcgaaccttaaggcttttaaactttttc 26651278  T
Q  507 acgctaaatacaacatttcgtcg-aactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgagg 605  Q
    ||||||| | |||||| |||| | ||||||||   ||  |||||| |||| |||| ||||||||||||||  |||||||| |||||||||||||||||||    
T  26651279 acgctaagtccaacatatcgttgaaactccttaagttgaagaaaaaacttcgatttctgcaagagtaaaagtcaactaatattgaccacattaaatgagg 26651378  T
Q  606 ctggtgaaaatacc 619  Q
    ||||||||| ||||    
T  26651379 ctggtgaaattacc 26651392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 290 - 420
Target Start/End: Original strand, 19879031 - 19879162
Alignment:
Q  290 actattatttatacattggaaataagt-ggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttga 388  Q
    |||| ||||| ||||| | |||||||| ||||||||||||||||||| ||||||||||||  ||||| ||||| |||||||||||||||| |||||||||    
T  19879031 actactatttttacatagaaaataagttggaaagaaactaatcccacgatcaacactcctctcatgttgacaaacgcttgtctcccacgttctcctttga 19879130  T
Q  389 ggaaactgcttctcctttgaaattcgaatctt 420  Q
    |||||   |||||| |||||||||| ||||||    
T  19879131 ggaaatcacttctcttttgaaattcaaatctt 19879162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 26650948 - 26651021
Alignment:
Q  194 tggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  26650948 tggttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcggtgcttcgagtgttttagaat 26651021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 19139081 - 19138997
Alignment:
Q  34 tgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggttttaa 119  Q
    |||||||||||| |||||||||||||||||||||| || ||||||||||| | |||||||||||||||||||||||||| ||||||    
T  19139081 tgcattttgttgttgtgcgttcatcgagttcataggttgcttaacgaacgag-cgagaccgtgtggcgtctttcgacagattttaa 19138997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 17402838 - 17402904
Alignment:
Q  201 acaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||||||||||||||| ||||| ||| |||||||||| | |||||||||||||||||||||||    
T  17402838 acaaatcctttacatacattctttataacttttttctctcgtgccggtacttagagtgttttagaat 17402904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 25520511 - 25520443
Alignment:
Q  195 ggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgtttta 263  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||| ||  |||| ||||||||||    
T  25520511 ggttcgacaaaacctttacatacattatgtatgactcttttctctcgcgccgtcacttcgagtgtttta 25520443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 327 - 413
Target Start/End: Original strand, 17402982 - 17403065
Alignment:
Q  327 taatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattc 413  Q
    ||||||||| |||||||||||||||| |||||||||  |||||||||||| | |||| |||||||||| |||||| |||||||||||    
T  17402982 taatcccacgatcaacactccttccacgtagacaac--cttgtctcccacattctccattgaggaaaccgcttct-ctttgaaattc 17403065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 18929327 - 18929417
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| | ||||  |||||||| ||||| |||||||||||| ||||||||| | ||||||| || |||||||| ||||||||||||||    
T  18929327 tgcattaaaaataaaggtggttcgataaatcttttacatacattctttatgactatcttctctcacgccggtacttcgagtgttttagaat 18929417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 31404147 - 31404073
Alignment:
Q  194 tggttcgacaaatccttt-acatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||||||||| ||| ||||||||| | ||| |||||||||||||||| |||||||| ||||||||||||||    
T  31404147 tggttcgacaaatcattttacatacattctgtataactcttttctctcgcgccggtacttcgagtgttttagaat 31404073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 24543754 - 24543816
Alignment:
Q  50 gcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacag 112  Q
    ||||||||| ||||||||| || ||||| |||| |||||||||||| ||||||||||||||||    
T  24543754 gcgttcatcaagttcataggttgcttaatgaacaggacgagaccgtatggcgtctttcgacag 24543816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 545 - 625
Target Start/End: Original strand, 17403199 - 17403279
Alignment:
Q  545 agaaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaaaataccatctaa 625  Q
    |||||||||||  ||| ||||||  ||||||   |||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  17403199 agaaaagacttcaattgctgcaaaggtaaaagttaactaatgttgaccacattaaatgaggctggtaaaattaccagctaa 17403279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 18929189 - 18929253
Alignment:
Q  47 tgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgaca 111  Q
    |||||||||||||||||| ||| || |||||||||| |||||| ||| |||||||| ||||||||    
T  18929189 tgtgcgttcatcgagttcgtaggttgcttaacgaacaggacgataccctgtggcgtatttcgaca 18929253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 309 - 412
Target Start/End: Original strand, 24544060 - 24544161
Alignment:
Q  309 aaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttga 408  Q
    |||||| |||||| || ||||  |||| |||| |||| |||||||||| || ||||||||||||||||||  ||| |||||||||| |||||| ||||||    
T  24544060 aaataactggaaaaaacctaactccacgatcagcacttcttccatgtaaactaccgcttgtctcccacgt-ttccattgaggaaaccgcttct-ctttga 24544157  T
Q  409 aatt 412  Q
    ||||    
T  24544158 aatt 24544161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 20378891 - 20378957
Alignment:
Q  43 ttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcga 109  Q
    |||||||||||||||||||||| ||| || |||||| |||| || ||||||||||||| | ||||||    
T  20378891 ttggtgtgcgttcatcgagttcgtaggttgcttaacaaacgagaggagaccgtgtggcctatttcga 20378957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 20489585 - 20489520
Alignment:
Q  47 tgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacag 112  Q
    |||||||||||| ||||||||| |||||| ||||||  | |||||||||| |||||||| ||||||    
T  20489585 tgtgcgttcatcaagttcataggtttctttacgaacaagtcgagaccgtgaggcgtcttccgacag 20489520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 24543911 - 24543994
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgtt 260  Q
    |||||||| | ||||  |||||| | |||||||||||||| ||||| ||| | |||||||||||||| || ||||| |||||||    
T  24543911 tgcattaaaaataaaggtggttccagaaatcctttacatatattatgtataaatcttttctctcgcgccgatacttcgagtgtt 24543994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 29891205 - 29891164
Alignment:
Q  337 atcaacactccttccatgtagacaaccgcttgtctcccacgt 378  Q
    ||||||||| ||||||| | ||||||||||||||||||||||    
T  29891205 atcaacacttcttccatttggacaaccgcttgtctcccacgt 29891164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 6e-55; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 290 - 495
Target Start/End: Original strand, 24832589 - 24832792
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgag 389  Q
    |||||||||||||||| |||||||||| |||||||||||||| ||  |||| |||||||||||||||||||||||||||||| |||||| |||| |||||    
T  24832589 actattatttatacataggaaataagtagaaagaaactaatctcatgatcaccactccttccatgtagacaaccgcttgtcttccacgttctcccttgag 24832688  T
Q  390 gaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttca 489  Q
    ||||| ||||||| ||||||||| |||| ||||||||| ||||||||  ||| ||||||| ||||||||| |||||||||| ||||| ||||||||||||    
T  24832689 gaaaccgcttctcttttgaaatttgaat-tttcccgcttcaaaggcaaatgc-ttgacttcgacggcttcacttcttgcttcgtatcttgtcgaacttca 24832786  T
Q  490 atgctt 495  Q
    | ||||    
T  24832787 aagctt 24832792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 337 - 626
Target Start/End: Complemental strand, 4173392 - 4173105
Alignment:
Q  337 atcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaatctttcccgctccaaaggca 436  Q
    ||||||||| |||||||||| |||||||||||||||||  || |||| |||||||||| ||||||| ||||||||||||||||| ||||| |||||||||    
T  4173392 atcaacacttcttccatgtacacaaccgcttgtctcccttgttctcccttgaggaaaccgcttctcttttgaaattcgaatctt-cccgccccaaaggca 4173294  T
Q  437 gttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttcaatgcttcgaaacttttcacgctaaatacaacatttcgtcgaactcct 536  Q
     |||||| ||||| |||| |||| || |||  | |||||| ||| ||||||||||||||| | ||| || ||||||  | |||||| ||||||||||| |    
T  4173293 attgctt-gacttcgacgacttcactactttttatgtatcttgttgaacttcaatgcttcaagactctttacgctaggtccaacatctcgtcgaactctt 4173195  T
Q  537 ttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaaaataccatctaac 626  Q
    ||||||  || ||| |||||||| ||||||| | || ||  ||||||||||||| |||||||||| |||| ||||||||||||| |||||    
T  4173194 ttgattgaaggaaatactttgatacctgcaaaattataagtcaactaatgttgaacacattaaataaggcaggtgaaaataccagctaac 4173105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 290 - 626
Target Start/End: Original strand, 20146033 - 20146369
Alignment:
Q  290 actattatttatacattggaaataagt-ggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttga 388  Q
    |||| ||||||||||| |||||||| | ||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||  |||||||||    
T  20146033 actactatttatacataggaaataacttggaaagaaactaatcccacgatcagcactccttccatgaagacaaccgcttgtctcccacgctctcctttga 20146132  T
Q  389 ggaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttc 488  Q
    ||||||   ||||| ||||||||||||||| |||||||| ||||||||||||| |||| || ||  | || ||||||||  | ||||   ||||||||||    
T  20146133 ggaaaccatttctcttttgaaattcgaatc-ttcccgcttcaaaggcagttgc-ttgaattcgaacgttttgcttcttgactcgtatttagtcgaacttc 20146230  T
Q  489 aatgcttcgaaacttttcacgctaaatacaacatttcgtcg-aactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatgt 587  Q
    || ||||| | |||||| | ||||| | |||||| |||| | ||||||||| |    || |||  ||| |||||||  || |||||||  ||||||||||    
T  20146231 aaggcttcaagactttttatgctaactccaacatctcgttgaaactcctttaacagaaggaaaagcttcgattcctttaacagtaaaagtcaactaatgt 20146330  T
Q  588 tgaccacattaaatgaggctggtgaaaataccatctaac 626  Q
    ||||||||||| || | |||| |||||||||||||||||    
T  20146331 tgaccacattacataacgctgatgaaaataccatctaac 20146369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 294 - 625
Target Start/End: Complemental strand, 14987070 - 14986744
Alignment:
Q  294 ttatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaa 393  Q
    |||||||||||  | ||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14987070 ttatttatacaaagaaaataagtggaaagaaacttatctcacgatcatcactccttccatgtagacaaccgcttgtctcccacgttctcctttgaggaaa 14986971  T
Q  394 ctgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttcaatgc 493  Q
    |  ||||| ||||| || ||||| | |||| ||| ||||||||||||| ||||||| ||| | |||||||| ||  | ||||| ||| |||||| || ||    
T  14986970 ccacttct-ctttggaaatcgaa-ccttcctgcttcaaaggcagttgc-ttgacttcgacagtttcgcttcgtgactcgtatcttgttgaactttaaggc 14986874  T
Q  494 ttcgaaac-ttttcacgctaaatacaacatttcgtcg-aactcctttgattagag-aaaagactttgattcctgcaagagtaaaaaacaactaatgttga 590  Q
    || |  || |||||| |  || |  ||||| |||| | |||| |||| ||| ||| |||| |||| |||||||||||||||||||  |||||||||||||    
T  14986873 tttgggacattttcatgtgaagtctaacatctcgttgaaacttcttttattggagaaaaatacttggattcctgcaagagtaaaagtcaactaatgttga 14986774  T
Q  591 ccacattaaatgaggctggtgaaaataccatctaa 625  Q
    ||     ||||||||||||||||||||||| ||||    
T  14986773 cc-----aaatgaggctggtgaaaataccagctaa 14986744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 294 - 625
Target Start/End: Complemental strand, 15416681 - 15416355
Alignment:
Q  294 ttatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaa 393  Q
    |||||||||||  | ||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15416681 ttatttatacaaagaaaataagtggaaagaaacttatctcacgatcatcactccttccatgtagacaaccgcttgtctcccacgttctcctttgaggaaa 15416582  T
Q  394 ctgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttcaatgc 493  Q
    |  ||||| ||||| || ||||| | |||| ||| ||||||||||||| ||||||| ||| | |||||||| ||  | ||||| ||| |||||| || ||    
T  15416581 ccacttct-ctttggaaatcgaa-ccttcctgcttcaaaggcagttgc-ttgacttcgacagtttcgcttcgtgactcgtatcttgttgaactttaaggc 15416485  T
Q  494 ttcgaaac-ttttcacgctaaatacaacatttcgtcg-aactcctttgattagag-aaaagactttgattcctgcaagagtaaaaaacaactaatgttga 590  Q
    || |  || |||||| |  || |  ||||| |||| | |||| |||| ||| ||| |||| |||| |||||||||||||||||||  |||||||||||||    
T  15416484 tttgggacattttcatgtgaagtctaacatctcgttgaaacttcttttattggagaaaaatacttggattcctgcaagagtaaaagtcaactaatgttga 15416385  T
Q  591 ccacattaaatgaggctggtgaaaataccatctaa 625  Q
    ||     ||||||||||||||||||||||| ||||    
T  15416384 cc-----aaatgaggctggtgaaaataccagctaa 15416355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 24832306 - 24832424
Alignment:
Q  19 cctaggacatgtttatgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggtttta 118  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  24832306 cctaggacatgttg-tgcattttgttggtgtgcgttcatcgagttcgtaggttgtttaacgaacgggacgagaccgtgtggcgtctttcgacaagtttta 24832404  T
Q  119 atgcattatgtttaaattgc 138  Q
    |||||||| |||||||||||    
T  24832405 atgcattaagtttaaattgc 24832424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 309 - 439
Target Start/End: Original strand, 2547149 - 2547278
Alignment:
Q  309 aaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttga 408  Q
    |||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||  ||| || |||||    
T  2547149 aaataactagaaagaaactaatcccacgatcaacactccttccatgtagacaaccgcttgtctcccacgttctccattgagaaaaccacttgtcttttga 2547248  T
Q  409 aattcgaatctttcccgctccaaaggcagtt 439  Q
    ||||| |||| |||||||| |||||||||||    
T  2547249 aattcaaatc-ttcccgcttcaaaggcagtt 2547278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 4173582 - 4173480
Alignment:
Q  165 tacagatgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttag 264  Q
    |||| |||||||||||||||   ||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||    
T  4173582 tacaaatgcaagtgcattaaagataaaactagttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcgatacttcgagtgttttag 4173483  T
Q  265 aat 267  Q
    |||    
T  4173482 aat 4173480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 31443555 - 31443456
Alignment:
Q  19 cctaggacatgtttatgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggtttta 118  Q
    |||||||||||||  |||||||||||| |||||||||||||||||| ||| || |||||||||||||| | ||||||||| | |||||||||||||||||    
T  31443555 cctaggacatgttg-tgcattttgttgttgtgcgttcatcgagttcgtaggttgcttaacgaacgggatgggaccgtgtgtcatctttcgacaggtttta 31443457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 547 - 626
Target Start/End: Original strand, 2545771 - 2545850
Alignment:
Q  547 aaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaaaataccatctaac 626  Q
    ||||||||| |||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||| ||||| |||||    
T  2545771 aaaagacttcgattcctgcaagagtaaaagtcaagtaatgttgaccacattaaatgaggctggtgaaattaccagctaac 2545850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 14987368 - 14987282
Alignment:
Q  19 cctaggacatgtttatgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtcttt 106  Q
    |||||||||||||  |||||||||||  |||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||    
T  14987368 cctaggacatgttg-tgcattttgtttttgtgcgttcatcgagttcatacgttgcttaacgaacgggacgagaccgtgtggcgtcttt 14987282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 15416979 - 15416893
Alignment:
Q  19 cctaggacatgtttatgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtcttt 106  Q
    |||||||||||||  |||||||||||  |||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||    
T  15416979 cctaggacatgttg-tgcattttgtttttgtgcgttcatcgagttcatacgttgcttaacgaacgggacgagaccgtgtggcgtcttt 15416893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 20145903 - 20145993
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| | ||||  ||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||||| ||||||||||||||    
T  20145903 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctcttctctcgcgccagtacttcgagtgttttagaat 20145993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 17600641 - 17600712
Alignment:
Q  196 gttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||| | |||||||| ||||||||||||||    
T  17600641 gttcgacaaatcctttacatacattctttatgactctttcctctcgtgccggtacttcgagtgttttagaat 17600712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 24832448 - 24832546
Alignment:
Q  165 tacagatgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgtttta 263  Q
    |||| ||||||||||||||| | |||   ||||||||||||| ||||||||||||| |||||||||||||||||| ||| || ||||| ||||||||||    
T  24832448 tacaaatgcaagtgcattaaaaataatggtggttcgacaaattctttacatacattctttatgactcttttctcttgcgccgatacttcgagtgtttta 24832546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 14987187 - 14987114
Alignment:
Q  194 tggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| ||||| |||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||    
T  14987187 tggttcgaaaaatcttttacatacattctttatgactcttttctctcgcaccggtacttcgagtgttttagaat 14987114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 15416798 - 15416725
Alignment:
Q  194 tggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| ||||| |||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||    
T  15416798 tggttcgaaaaatcttttacatacattctttatgactcttttctctcgcaccggtacttcgagtgttttagaat 15416725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 2547024 - 2547089
Alignment:
Q  202 caaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||||||||| |||| ||||||||| |||||||||| |||||||||| ||||||||||||||    
T  2547024 caaatcctttacatccattctttatgacttttttctctcgggtcggtacttcgagtgttttagaat 2547089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 20145749 - 20145830
Alignment:
Q  31 ttatgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacag 112  Q
    ||||||||||||||   ||| ||||||||| ||| ||| || |||||| |||||||||||||||||||||||||||||||||    
T  20145749 ttatgcattttgttttcgtgtgttcatcgacttcgtaggttgcttaacaaacgggacgagaccgtgtggcgtctttcgacag 20145830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 4173699 - 4173616
Alignment:
Q  43 ttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggttttaatgcatta 126  Q
    |||||||  |||| |||||||| ||| || ||||||||||| ||| ||||| |||||||||||| |||||||||||||||||||    
T  4173699 ttggtgtttgttcgtcgagttcgtaggttgcttaacgaacgagactagaccatgtggcgtcttttgacaggttttaatgcatta 4173616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 418
Target Start/End: Original strand, 2545555 - 2545640
Alignment:
Q  334 acaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcc-tttgaggaaactgcttctcctttgaaattcgaatc 418  Q
    ||||||| |||||||||||| |||| |||||||||||||  |||| |||| |||||||||||  |||||| |||||||||||||||    
T  2545555 acaatcagcactccttccatatagagaaccgcttgtctctaacgttctccatttgaggaaaccacttctcttttgaaattcgaatc 2545640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 2546864 - 2546927
Alignment:
Q  47 tgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgac 110  Q
    |||||||||||| ||||||||| || ||| |||||| ||| |||||||| ||||||||||||||    
T  2546864 tgtgcgttcatcaagttcataggttgctttacgaacaggatgagaccgtatggcgtctttcgac 2546927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 547 - 597
Target Start/End: Original strand, 2547389 - 2547439
Alignment:
Q  547 aaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacatt 597  Q
    ||||||||||||||| |||||||||||||  ||||||||||||| ||||||    
T  2547389 aaaagactttgattcatgcaagagtaaaagtcaactaatgttgagcacatt 2547439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 10649318 - 10649265
Alignment:
Q  209 tttacatacattatttatgactcttttctctcgcgtcggtacttagagtgtttt 262  Q
    |||||||||||| ||||| |||||||||||||| | |||||||| |||||||||    
T  10649318 tttacatacattctttataactcttttctctcgtgccggtacttcgagtgtttt 10649265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 420
Target Start/End: Original strand, 17600806 - 17600882
Alignment:
Q  343 actccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaatctt 420  Q
    ||||||||||||||||| |||| |||||| |||||| |||| ||||||||||  ||||| |||| ||||| |||||||    
T  17600806 actccttccatgtagactaccggttgtcttccacgttctccattgaggaaaccacttct-ctttaaaatttgaatctt 17600882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 3743492 - 3743560
Alignment:
Q  194 tggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgtttt 262  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||   ||  |||||||| |||||||||    
T  3743492 tggttcgacaaatcctttgtatacattttttatgactcttttcttcagcaccggtacttcgagtgtttt 3743560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 107; Significance: 4e-53; HSPs: 3)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 316 - 620
Target Start/End: Complemental strand, 5641 - 5337
Alignment:
Q  316 tggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcga 415  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | |||| | |||||||| ||||||| ||||||||||||    
T  5641 tggaatgaaactaatcccacgatcaacactccttccatatagacaaccgcttgtctcccacattctccctcgaggaaaccgcttctcttttgaaattcga 5542  T
Q  416 atctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttcaatgcttcgaaac-ttttcacgctaaa 514  Q
    | | |||||||| || || ||||||| ||||||| ||||| || ||| ||||  | ||||||||||||||| ||| ||||||| || |||| | |||||     
T  5541 a-cattcccgcttcagagacagttgc-ttgacttcgacggttttgctacttgactcgtatcctgtcgaactgcaaggcttcgagactttttgatgctaag 5444  T
Q  515 tacaacatttcgtcg-aactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaa 613  Q
    | |||||| |||||| || | |||  |||   ||||| |||| ||| |||||||||||||||  ||||||| |||||||||| |||||||||||||||||    
T  5443 tccaacatctcgtcgaaaattcttcaattgatgaaaaaacttcgatacctgcaagagtaaaagtcaactaaagttgaccacaataaatgaggctggtgaa 5344  T
Q  614 aatacca 620  Q
    |||||||    
T  5343 aatacca 5337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 5805 - 5708
Alignment:
Q  170 atgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||||| | ||||  |||| |||||||| |||||||||||||  ||||||||||||| ||||| ||||||||||  || ||||||||||    
T  5805 atgcaagtgcattaaaaataaaggtggtccgacaaattctttacatacattccttatgactcttttttctcgtgtcggtacttcaagcgttttagaat 5708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 5964 - 5865
Alignment:
Q  19 cctaggacatgtttatgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggtttta 118  Q
    |||||||||||||  |||||||||||  |||| ||||||||||||| ||| || |||||||||| |||| |||||| ||  |||||||||||||||||||    
T  5964 cctaggacatgttg-tgcattttgttcttgtgtgttcatcgagttcgtaggttgcttaacgaacaggacaagaccgcgttccgtctttcgacaggtttta 5866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 92; Significance: 3e-44; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 289 - 416
Target Start/End: Original strand, 21011 - 21138
Alignment:
Q  289 gactattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttga 388  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||  || |||||    
T  21011 gactactatttatacataggaaataagtggaaagaaactaatcccacgatcaacactccttccatgttgacaaccgcttgtctcccacgttttcttttga 21110  T
Q  389 ggaaactgcttctcctttgaaattcgaa 416  Q
    |||||| ||||||| |||||||||||||    
T  21111 ggaaaccgcttctcttttgaaattcgaa 21138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 20900 - 20973
Alignment:
Q  194 tggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||| |||||| ||||||||||||| |||||||||||||||||||| ||  ||||||  |||||||||||||    
T  20900 tggttccacaaattctttacatacattctttatgactcttttctctcgtgttagtacttcaagtgttttagaat 20973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 5e-40; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 290 - 626
Target Start/End: Original strand, 28371255 - 28371593
Alignment:
Q  290 actattatttatacattggaaataagt-ggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttga 388  Q
    |||| |||||||||||  ||||||| | ||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| | |||||||||    
T  28371255 actactatttatacataagaaataacttggaaagaaactaatctcacgatcagcactccttccatgtagacaaccgcttgtctcccacattctcctttga 28371354  T
Q  389 ggaaactgcttctc-ctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaactt 487  Q
    |||||| |||||||  ||||||||| ||||| ||||||||||||||| | |||| ||||||| ||||| ||  |||||||  | ||||| ||| ||||||    
T  28371355 ggaaaccgcttctctttttgaaatttgaatc-ttcccgctccaaaggaaattgc-ttgacttcgacggttttacttcttgactcgtatcttgttgaactt 28371452  T
Q  488 caatgcttcgaaac-ttttcacgctaaatacaacatttcgtc-gaactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaat 585  Q
     || ||||| | || |||||| ||||| | |||||| |||||  ||||||||| | |   | ||||  || ||||||| | ||| |||||  ||||||||    
T  28371453 taaggcttccagactttttcatgctaagtccaacatctcgtcaaaactcctttaactgagggaaaggtttcgattcctaccagaataaaagtcaactaat 28371552  T
Q  586 gttgaccacattaaatgaggctggtgaaaataccatctaac 626  Q
     ||| ||||||||||| | ||| |||||||||||| |||||    
T  28371553 attggccacattaaattatgctagtgaaaataccaactaac 28371593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 294 - 449
Target Start/End: Original strand, 10661852 - 10662006
Alignment:
Q  294 ttatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttcca-tgtagacaaccgcttgtctcccacgtgctcctttgaggaa 392  Q
    |||||||||||| | ||| || |||||||||||||||||||| |||||||||||||||| | | ||||||| |||||||||||||| |||| ||||||||    
T  10661852 ttatttatacatagaaaacaactggaaagaaactaatcccacgatcaacactccttccattatggacaaccacttgtctcccacgttctccattgaggaa 10661951  T
Q  393 actgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactt 449  Q
    || | ||||| ||||||||||||| | || ||||| |||||| ||||| ||||||||    
T  10661952 accgattctcttttgaaattcgaa-catttccgcttcaaaggtagttg-tttgactt 10662006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 472 - 618
Target Start/End: Complemental strand, 23540138 - 23539991
Alignment:
Q  472 gtatcctgtcgaacttcaatgcttcgaaacttttcacgctaaatacaacatttcgtcgaa-ctcctttgattagagaaaagactttgattcctgcaagag 570  Q
    ||||| |||| ||||||||||||| || |||||| ||| ||| | |||||| |||||||| |||||||||||  |||||||||||  | | |||||||||    
T  23540138 gtatcttgtcaaacttcaatgctttgagactttttacgttaagtccaacatctcgtcgaaactcctttgattgaagaaaagacttcaaatactgcaagag 23540039  T
Q  571 taaaaaacaactaatgttgaccacattaaatgaggctggtgaaaatac 618  Q
    |||||  |||||||| |||||||||||||||||||||||||| |||||    
T  23540038 taaaagtcaactaatattgaccacattaaatgaggctggtgacaatac 23539991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 26136388 - 26136299
Alignment:
Q  19 cctaggacatgtttatgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcga 109  Q
    |||||||||||||  |||||||||||||||| |||||||||||||| ||| || ||||||||| | |||||||||||||||||||||||||    
T  26136388 cctaggacatgttg-tgcattttgttggtgttcgttcatcgagttcgtaggttgcttaacgaatgagacgagaccgtgtggcgtctttcga 26136299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 23540517 - 23540418
Alignment:
Q  19 cctaggacatgtttatgcattttgttggtgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggtttta 118  Q
    |||||||||||||  |||||||||||| ||| |||||||| ||||  ||| || ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  23540517 cctaggacatgttg-tgcattttgttgttgtccgttcatcaagtttgtaggttgcttgacgaacgggtcgagaccgtgtggcgtctttcgacaggtttta 23540419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 9218169 - 9218257
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| | ||||  |||||||||||||| |||||||||||| | |||||||  |||||||||||||||||||| ||||||||||||||    
T  9218169 tgcattaaaaataaagatggttcgacaaatcatttacatacattctgtatgact--tttctctcgcgtcggtacttcgagtgttttagaat 9218257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 547 - 614
Target Start/End: Original strand, 10662109 - 10662176
Alignment:
Q  547 aaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaaa 614  Q
    ||||||||| || ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  10662109 aaaagacttcgagtcctgcaagagtaaaagtcaactaatgttgaccacattaaatgagtctggtgaaa 10662176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 16600594 - 16600684
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| | ||||  |||||||||||||||||||| |||||||| ||| ||||| |||||||||| |||||||| ||||||| ||||||    
T  16600594 tgcattaaaaataaatgtggttcgacaaatcctttacgtacattatgtataactctattctctcgcgccggtacttcgagtgttgtagaat 16600684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 23540358 - 23540261
Alignment:
Q  170 atgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||||| | ||||  |||||||| ||||| |||||||||||| ||||||| |||||||||| | | |||||||| |||| |||||||||    
T  23540358 atgcaagtgcattaaaaataaaggtggttcgaaaaatcttttacatacattctttatgattcttttctcttgagccggtactttgagtattttagaat 23540261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 327 - 420
Target Start/End: Complemental strand, 24577308 - 24577216
Alignment:
Q  327 taatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaatctt 420  Q
    ||||||||  |||| ||||| ||||||||| ||||||||||||||||||||| |||| |||||||||  | |||| ||||||||||||||||||    
T  24577308 taatcccaagatcagcactcattccatgtaaacaaccgcttgtctcccacgttctccattgaggaaatcgtttct-ctttgaaattcgaatctt 24577216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 28370987 - 28371051
Alignment:
Q  48 gtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacag 112  Q
    ||||||||||||||||||||| || ||||||||| ||||||| |  |||||||||||||||||||    
T  28370987 gtgcgttcatcgagttcataggttgcttaacgaatgggacgaaattgtgtggcgtctttcgacag 28371051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 9286438 - 9286367
Alignment:
Q  196 gttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||||||||||||||| | ||| ||| |||||||||||  |||||||| ||||||| ||||||    
T  9286438 gttcgacaaatcctttacatacattttgtataactattttctctcgcaccggtacttcgagtgttgtagaat 9286367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 9218337 - 9218387
Alignment:
Q  328 aatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgt 378  Q
    |||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  9218337 aatcccatgatcaacactccttccatgtagacaactgcttgtctcccacgt 9218387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 28371143 - 28371215
Alignment:
Q  195 ggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||||||| ||||||||||||| ||||||||| ||||| ||| |   ||||||| ||||||||||||||    
T  28371143 ggttcgacaaatactttacatacattctttatgacttttttcactcacactggtacttcgagtgttttagaat 28371215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 18672216 - 18672144
Alignment:
Q  195 ggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||| ||||||| |||||||||||| | ||| ||||||||||||| || | |||||| ||||||| ||||||    
T  18672216 ggttcaacaaatcatttacatacattttgtataactcttttctctctcgccagtacttcgagtgttgtagaat 18672144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 332 - 416
Target Start/End: Complemental strand, 22713554 - 22713472
Alignment:
Q  332 ccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaa 416  Q
    |||| ||||||||| ||||||| | ||||||||||||||||||||||  ||| || ||||||| | |||| ||||||||||||||    
T  22713554 ccacgatcaacacttcttccatttggacaaccgcttgtctcccacgt-ttccattaaggaaaccgtttct-ctttgaaattcgaa 22713472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 13110234 - 13110324
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| | ||||  |||||| ||||||| | |||||| ||| | ||| ||||||||||||| || |||||||| ||||||| ||||||    
T  13110234 tgcattaaaaataaaggtggttcaacaaatcatatacatatattttgtataactcttttctctctcgccggtacttcgagtgttgtagaat 13110324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 25095111 - 25095169
Alignment:
Q  209 tttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||| || ||| |||||||| ||||||| |||||||| | ||||||||||||    
T  25095111 tttacatacatcatgtataactcttttatctcgcgccggtacttcgggtgttttagaat 25095169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 26136249 - 26136199
Alignment:
Q  170 atgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacatt 220  Q
    ||||||||||||||| | ||||  |||| ||||||||||||||||||||||    
T  26136249 atgcaagtgcattaaaaataaaggtggtccgacaaatcctttacatacatt 26136199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 27123678 - 27123623
Alignment:
Q  210 ttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||  ||||||| ||||||    
T  27123678 ttacatacattatgtataactcttttctctcgcatcggtact--gagtgttgtagaat 27123623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 9286312 - 9286244
Alignment:
Q  347 cttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaa 416  Q
    ||||||| | |||||||||||||||||||| |  ||| |||||||||||  |||| ||||||||||||||    
T  9286312 cttccatttggacaaccgcttgtctcccacattttccattgaggaaactatttct-ctttgaaattcgaa 9286244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 32352216 - 32352269
Alignment:
Q  187 gtaaaattggttcgacaaatcct-ttacatacattatttatgactcttttctct 239  Q
    |||||| |||||||||||||| | ||||||||||| | ||||||||||||||||    
T  32352216 gtaaaagtggttcgacaaatcatattacatacattttgtatgactcttttctct 32352269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 32368877 - 32368930
Alignment:
Q  187 gtaaaattggttcgacaaatcct-ttacatacattatttatgactcttttctct 239  Q
    |||||| |||||||||||||| | ||||||||||| | ||||||||||||||||    
T  32368877 gtaaaagtggttcgacaaatcatattacatacattttgtatgactcttttctct 32368930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 2e-39; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 316 - 620
Target Start/End: Original strand, 20146378 - 20146682
Alignment:
Q  316 tggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcga 415  Q
    ||||||||||||| |||||| |||||||||||||| |||||||||| | |||||||||||||| |||| | |   |||  ||||||| ||||||||||||    
T  20146378 tggaaagaaactagtcccacgatcaacactccttctatgtagacaatcacttgtctcccacgttctccctagttaaaatcgcttctcttttgaaattcga 20146477  T
Q  416 atctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttcaatgcttcgaaacttttcac-gctaaa 514  Q
    | |||||  ||| || ||||||| ||||  |||| || || || ||||||||  | |||| |||||||||||||| ||||||| ||||||||  |||||     
T  20146478 acctttct-gcttcagaggcagtggctta-acttcgatggttttgcttcttgactcgtattctgtcgaacttcaaggcttcgagacttttcaatgctaag 20146575  T
Q  515 tacaacatttcgtcgaa-ctcctttgattagag-aaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgaggctggtga 612  Q
    | |||||| |||||||| |||||  |||| ||| ||||||||| ||||||||||||||||| |   ||||||||||| |||||||||||||| |||||||    
T  20146576 tccaacatctcgtcgaaactcctacgatt-gagtaaaagacttcgattcctgcaagagtaatagttaactaatgttggccacattaaatgagactggtga 20146674  T
Q  613 aaatacca 620  Q
    | ||||||    
T  20146675 atatacca 20146682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 328 - 626
Target Start/End: Complemental strand, 11013792 - 11013494
Alignment:
Q  328 aatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaatctttcccgct 427  Q
    |||||||| |||| |||| ||||||||||||||||| |||||||||||||| |||| |||||||||| | |||| |||||||||||||||| |||  ||     
T  11013792 aatcccacgatcagcacttcttccatgtagacaaccacttgtctcccacgttctccattgaggaaaccgtttct-ctttgaaattcgaatc-ttcttgcc 11013695  T
Q  428 ccaaaggcagttgctttgactttgacggcttcgc-ttcttgctttgtatcctgtcgaacttcaatgcttcga-aacttttcacgctaaatacaacatttc 525  Q
     ||| || |||||| ||||||| |||| ||| || ||| ||  | || || | |||||| | || ||||  | | | ||||| ||||| | |||||| ||    
T  11013694 tcaatggaagttgc-ttgacttcgacgactttgcattcctgactcgtgtcttatcgaaccttaaggcttttacatcctttcatgctaagtccaacatctc 11013596  T
Q  526 gtcg-aactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaaaataccatcta 624  Q
    |||| ||||||||   ||  ||||||||||| |||||||||||||||||||   | |||||||||||||||||||||||||||| ||||| ||||| |||    
T  11013595 gtcgaaactccttaagttgaagaaaagacttcgattcctgcaagagtaaaagtaagctaatgttgaccacattaaatgaggctgatgaaattaccagcta 11013496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 20146083 - 20146155
Alignment:
Q  47 tgtgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacaggttttaa 119  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||| || ||||||||||||||||    
T  20146083 tgtgcgttcatcgagttcgtaggtttcttaacgaacgggacgagaccgtgtggagtatttcgacaggttttaa 20146155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 33103075 - 33103146
Alignment:
Q  196 gttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||||||    
T  33103075 gttcgacaaatcctttacatacattctatatgactcttttctctcacgtcggtacttcgagtgttttagaat 33103146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 13202178 - 13202105
Alignment:
Q  194 tggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||| || ||||||| ||||||    
T  13202178 tggttcgacaaatcctttacatacattatgtataactattttctctcgcgccggtatttcgagtgttgtagaat 13202105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 170 - 267
Target Start/End: Original strand, 20146215 - 20146311
Alignment:
Q  170 atgcaagtgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||||| | ||||  |||| | | |||||||||||||||||  |||||||||||||||||||||  |||||||| ||||||||||||||    
T  20146215 atgcaagtgcattaaaaataaagatggtccaaaaaatcctttacatacatc-tttatgactcttttctctcgcaccggtactttgagtgttttagaat 20146311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 327 - 416
Target Start/End: Original strand, 33103225 - 33103312
Alignment:
Q  327 taatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaa 416  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||  ||  |||||||||| | |||| ||||||||||||||    
T  33103225 taatcccacaatcaacacttcttccatgtagacaaccacttgtctcccacgt-ttctattgaggaaaccgattct-ctttgaaattcgaa 33103312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 416
Target Start/End: Original strand, 20866435 - 20866512
Alignment:
Q  337 atcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaa 416  Q
    ||||||||| |||||||||| ||||||||||||||||||| |  ||| ||||||||||||||||| ||||||||||||||    
T  20866435 atcaacacttcttccatgtaaacaaccgcttgtctcccacat-ttccattgaggaaactgcttct-ctttgaaattcgaa 20866512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 36571786 - 36571696
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| | ||||  ||||||||||||||||||||||||||||| ||| |||||||||||||| |   |||||| ||||||| ||||||    
T  36571786 tgcattaaaaataaaggtggttcgacaaatcctttacatacattatgtataactcttttctctcgtgctagtacttcgagtgttgtagaat 36571696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 20150549 - 20150476
Alignment:
Q  194 tggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||| |||||||||||| ||| |||| | ||||||| ||||||||||||||||||||| ||||||| ||||||    
T  20150549 tggtttgacaaatcctttgcatgcattttgtatgacttttttctctcgcgtcggtacttcgagtgttgtagaat 20150476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 11013961 - 11013898
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctc 240  Q
    |||||||| | ||||  ||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  11013961 tgcattaaaaataaaggtggctcgacaaatcctttacatatattctttatgactcttttctctc 11013898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 17615318 - 17615389
Alignment:
Q  196 gttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||||||||||||||||| | | |||||||| |||| || | |||||| ||||||| ||||||    
T  17615318 gttcgacaaatcctttacatacattatgtgtaactcttttttctcccgcctgtacttcgagtgttgtagaat 17615389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 17615471 - 17615517
Alignment:
Q  332 ccacaatcaacactccttccatgtagacaaccgcttgtctcccacgt 378  Q
    |||||||||||||| ||| |||||||| |||||||||||||||||||    
T  17615471 ccacaatcaacacttcttacatgtagaaaaccgcttgtctcccacgt 17615517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 546 - 604
Target Start/End: Complemental strand, 22619770 - 22619712
Alignment:
Q  546 gaaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgag 604  Q
    |||||||||| |||||||||||   |||||  |||||||||||||||||||||||||||    
T  22619770 gaaaagacttcgattcctgcaaagataaaagtcaactaatgttgaccacattaaatgag 22619712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 327 - 416
Target Start/End: Complemental strand, 22607802 - 22607715
Alignment:
Q  327 taatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaa 416  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||| | ||||||  ||   ||||||||| |||||| ||||||||||||||    
T  22607802 taatctcacgatcaacacttcttccatgtagacaaccgcttgttttccacgt-ttcaactgaggaaaccgcttct-ctttgaaattcgaa 22607715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 22607935 - 22607874
Alignment:
Q  205 atcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaa 266  Q
    |||||||||||||||| ||||| |||||||||||| ||| |||||||| || |||| |||||    
T  22607935 atcctttacatacattttttataactcttttctcttgcgacggtacttcgattgttatagaa 22607874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 626
Target Start/End: Complemental strand, 13232494 - 13232415
Alignment:
Q  547 aaaagactttgattcctgc-aagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaaaataccatctaac 626  Q
    ||||||||||||||| ||| |||| |||||  |||||||||||||||||||||||| ||| |||| ||| ||||| |||||    
T  13232494 aaaagactttgattcttgctaaga-taaaagtcaactaatgttgaccacattaaataaggttggtcaaattaccacctaac 13232415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 327 - 402
Target Start/End: Complemental strand, 22619989 - 22619915
Alignment:
Q  327 taatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctc 402  Q
    ||||||||| ||||  | |||||||||||| |||||||||| ||||||||||  ||| |||||||||| |||||||    
T  22619989 taatcccacgatcagaaatccttccatgtaaacaaccgcttttctcccacgt-ttccattgaggaaaccgcttctc 22619915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 36571943 - 36571880
Alignment:
Q  49 tgcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacag 112  Q
    |||||||||| ||||||||| || ||| | |||| |||||||||||| || |||||||||||||    
T  36571943 tgcgttcatcaagttcataggttgctttatgaacaggacgagaccgtatgacgtctttcgacag 36571880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 13202023 - 13201977
Alignment:
Q  332 ccacaatcaacactccttccatgtagacaaccgcttgtctcccacgt 378  Q
    |||| |||| |||| ||||||| ||||||||||||||||||||||||    
T  13202023 ccacgatcagcacttcttccatttagacaaccgcttgtctcccacgt 13201977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 1e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 294 - 626
Target Start/End: Original strand, 11361820 - 11362158
Alignment:
Q  294 ttatttatacattggaaataagtggaaagaaactaatcccacaatcaacactc-----cttccatgtagacaaccgcttgtctcccacgtgctcctttga 388  Q
    |||||||||||| | ||||   |||||||||||||||||||| |||| || ||     ||||||| ||||||||| |||||||||||||| |||| || |    
T  11361820 ttatttatacatagaaaatgcatggaaagaaactaatcccacgatcagcaatctaatccttccatttagacaaccacttgtctcccacgttctccattca 11361919  T
Q  389 ggaaactgcttctcctttgaaattcgaatctttcccgctccaaaggcagttgctttgactttgacggcttcgcttct-tgctttgtatcctgtcgaactt 487  Q
    |||||| | ||||| || |||||||||||||| |||||| ||||||   |||||| ||||||||||| || || ||| ||  | || || |||||||| |    
T  11361920 ggaaaccgtttctctttagaaattcgaatctt-cccgcttcaaaggtcattgctt-gactttgacggttttgcgtctctgactcgtgtcttgtcgaacct 11362017  T
Q  488 caatgcttcga-aacttttcacgctaaatacaacatttcgtcgaa-ctcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaat 585  Q
     || ||||||| || |||||| ||||| | |||||| |||| ||| ||||||   ||  |||||||||||  || |||||||||||||||  ||||||||    
T  11362018 taaggcttcgagaatttttcatgctaagtccaacatctcgttgaaactccttaagttgaagaaaagacttcaatacctgcaagagtaaaagtcaactaat 11362117  T
Q  586 gttgaccacattaaatgaggctggtgaaaataccatctaac 626  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  11362118 gttgaccactttaaatgaggctggtgaaaataccagctaac 11362158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 290 - 420
Target Start/End: Complemental strand, 9409155 - 9409022
Alignment:
Q  290 actattatttatacattggaaa-taagtggaaagaaac---taatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctt 385  Q
    |||| ||||||||||| ||||| ||| |||||| ||||   ||||||||| ||||||||| |||||||||||||||||| |||||| |||| | |||| |    
T  9409155 actactatttatacataggaaaataactggaaaaaaacaaataatcccacgatcaacacttcttccatgtagacaaccgtttgtctaccacattctccat 9409056  T
Q  386 tgaggaaactgcttctcctttgaaattcgaatctt 420  Q
    ||||||||| |||||| ||||||||||||||||||    
T  9409055 tgaggaaaccgcttct-ctttgaaattcgaatctt 9409022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 9409285 - 9409195
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| | ||||  ||||||||||||||||||||||||||| ||||| ||| |||||||| ||| |||||||| ||||||||||||||    
T  9409285 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttataacttttttctcttgcgccggtacttcgagtgttttagaat 9409195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 11361686 - 11361776
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||| | ||||  ||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||||  | ||||||||||||||    
T  11361686 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttgtaactcttttccctcgcgtcggtaagtcgagtgttttagaat 11361776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 267
Target Start/End: Original strand, 16675138 - 16675218
Alignment:
Q  188 taaaattggttcgacaaatccttt-acatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||| |||||||||||||| ||| ||||||||| | ||| ||||| |||||||||  |||||||| ||||||||||||||    
T  16675138 taaaagtggttcgacaaatcattttacatacattctgtataactctcttctctcgcaccggtacttcgagtgttttagaat 16675218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 5358059 - 5358102
Alignment:
Q  196 gttcgacaaatcctttacatacattatttatgactcttttctct 239  Q
    |||||||||||| |||||||||||||| ||||||||||||||||    
T  5358059 gttcgacaaatcatttacatacattatgtatgactcttttctct 5358102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 9409422 - 9409360
Alignment:
Q  50 gcgttcatcgagttcatagatttcttaacgaacgggacgagaccgtgtggcgtctttcgacag 112  Q
    ||||||||||||||||||| || ||| |||||| |||||||||||||| || |||| ||||||    
T  9409422 gcgttcatcgagttcataggttgctttacgaacaggacgagaccgtgtagcctcttacgacag 9409360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 26654190 - 26654144
Alignment:
Q  194 tggttcgacaaatcct-ttacatacattatttatgactcttttctct 239  Q
    |||||||||||||| | ||||||||||||| ||||||||||||||||    
T  26654190 tggttcgacaaatcatattacatacattatgtatgactcttttctct 26654144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 316 - 626
Target Start/End: Complemental strand, 6030 - 5726
Alignment:
Q  316 tggaaagaaactaatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcga 415  Q
    |||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||      |||||||||||||  |||||| ||||||||||||    
T  6030 tggaaagaaactaatcccacgatcagcactcgttccatgtaggcaaccgcttgtctccca------cctttgaggaaaccacttctcttttgaaattcga 5937  T
Q  416 atctttcccgctccaaaggcagttgctttgactttgacggcttcgcttcttgctttgtatcctgtcgaacttcaatgcttcgaaac-ttttcacgctaaa 514  Q
    ||| ||||||||| |||||   || | ||||||| ||| | || |||| |||  | ||||| |||||||||| |  ||||| |  | |||||| |||||     
T  5936 atc-ttcccgctctaaaggtcatttc-ttgacttcgacagttttgcttattgagtcgtatcttgtcgaactttagggcttcaaggctttttcatgctaag 5839  T
Q  515 tacaacatttcgtcg-aactcctttgattagagaaaagactttgattcctgcaagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaa 613  Q
    |  ||||| |||| | ||||||||| | |   |||||| ||| |||||||||||||  ||||  || |||||||||||| |||||||||||| |||| ||    
T  5838 tctaacatctcgttgaaactcctttaactgaggaaaaggcttcgattcctgcaagaaaaaaagtcacctaatgttgaccgcattaaatgaggttggtaaa 5739  T
Q  614 aataccatctaac 626  Q
    ||||||| |||||    
T  5738 aataccagctaac 5726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 545 - 620
Target Start/End: Original strand, 5313 - 5388
Alignment:
Q  545 agaaaagactttgattcctgc-aagagtaaaaaacaactaatgttgaccacattaaatgaggctggtgaaaatacca 620  Q
    ||||||||||||||||||||| |||| |||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  5313 agaaaagactttgattcctgcgaaga-taaaagtcaactaatgttgaccacattaaatgatgctggtgaaattacca 5388  T

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Target: scaffold0161; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 330 - 394
Target Start/End: Original strand, 5098 - 5162
Alignment:
Q  330 tcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaac 394  Q
    |||||| |||| ||||||||||||||||||||||  ||||||||||||| |||| ||||| ||||    
T  5098 tcccacgatcagcactccttccatgtagacaaccttttgtctcccacgttctccattgagaaaac 5162  T

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Target: scaffold0337 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 17279 - 17336
Alignment:
Q  194 tggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtact 251  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||    
T  17279 tggttcgacaaatcctttacatacattctgtataactcttttctctcgcgccggtact 17336  T

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Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 328 - 416
Target Start/End: Complemental strand, 374088 - 374002
Alignment:
Q  328 aatcccacaatcaacactccttccatgtagacaaccgcttgtctcccacgtgctcctttgaggaaactgcttctcctttgaaattcgaa 416  Q
    |||| ||| |||| |||| ||||||||||||||||||||||||||||||||  ||| |||||||||| |||||| |||| |||||||||    
T  374088 aatctcacgatcagcacttcttccatgtagacaaccgcttgtctcccacgt-ttccattgaggaaaccgcttct-ctttaaaattcgaa 374002  T

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Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 374254 - 374172
Alignment:
Q  177 tgcattaagagtaaaattggttcgacaaatcctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgtt 260  Q
    |||||||| | ||||  ||||||||||||| ||||||||||||| | ||| |||||||||||||||| | |||||| |||||||    
T  374254 tgcattaaaaataaaggtggttcgacaaatactttacatacattttgtat-actcttttctctcgcgcctgtactttgagtgtt 374172  T

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Target: scaffold0002; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 547 - 610
Target Start/End: Complemental strand, 373869 - 373808
Alignment:
Q  547 aaaagactttgattcctgcaagag-taaaaaacaactaatgttgaccacattaaatgaggctggt 610  Q
    |||||||||||||||||   |||| |||||  |||||||||||||||||||||||||||| ||||    
T  373869 aaaagactttgattcct---agagataaaagtcaactaatgttgaccacattaaatgaggttggt 373808  T

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Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 12991 - 13050
Alignment:
Q  208 ctttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    ||||||||||||| ||||||||||||||||||||||   |||||| ||||||||||||||    
T  12991 ctttacatacattctttatgactcttttctctcgcgctagtacttcgagtgttttagaat 13050  T

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Target: scaffold0016; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 13090 - 13151
Alignment:
Q  290 actattatttatacattggaaataagtggaaagaaactaatcccacaatcaacactccttcc 351  Q
    |||| ||||||||||| | ||||||| | ||||||||||||||||| |||||||||||||||    
T  13090 actactatttatacatagaaaataagagtaaagaaactaatcccacgatcaacactccttcc 13151  T

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Target: scaffold0142 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 20617 - 20671
Alignment:
Q  212 acatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaa 266  Q
    ||||||||||| ||| |||||||||||||||| |||||||| |||||||||||||    
T  20617 acatacattatgtataactcttttctctcgcgccggtacttcgagtgttttagaa 20671  T

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Target: scaffold1102 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 970 - 912
Alignment:
Q  209 tttacatacattatttatgactcttttctctcgcgtcggtacttagagtgttttagaat 267  Q
    |||||||||||||| ||| |||||| | ||||||| |||||||| ||||||||| ||||    
T  970 tttacatacattatgtataactcttctttctcgcgccggtacttcgagtgttttggaat 912  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 33323 - 33270
Alignment:
Q  187 gtaaaattggttcgacaaatcct-ttacatacattatttatgactcttttctct 239  Q
    |||||| ||||||||||| || | ||||||||||||| ||||||||||||||||    
T  33323 gtaaaagtggttcgacaattcatattacatacattatgtatgactcttttctct 33270  T

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