View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10080_high_23 (Length: 342)

Name: NF10080_high_23
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10080_high_23
NF10080_high_23
[»] chr4 (3 HSPs)
chr4 (199-330)||(49162364-49162496)
chr4 (19-165)||(49161901-49162060)
chr4 (163-200)||(49162070-49162107)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 199 - 330
Target Start/End: Original strand, 49162364 - 49162496
Alignment:
199 tatattttttgagaaaccacaaattcattcgccattatttccgcacaatatccct-ccacaagttgcactcaagttacctttagaagtgttgtcgatgtt 297  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||    
49162364 tatatttttagagaaaccacaaattcattcgccattatttccgcacaatataccttccacaagttgcactcaagttacccttagaagtgttgtcgatgtt 49162463  T
298 aagactaacccagcccatcactggtgatgtcca 330  Q
    |||||||||||||||||||||||||| ||||||    
49162464 aagactaacccagcccatcactggtggtgtcca 49162496  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 49161901 - 49162060
Alignment:
19 acctcaatccattacaagaagtcggtcaatgttttgaagcaaaatacaaccagcactgctctacacttattagagttgatcgaactaacaatacaatcaa 118  Q
    |||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
49161901 acctcaatccattataagaagtcagtcaaggttttgaagcaaagtacaaccagcactgctctacacttattagagttgatctaactaacaatacaatcaa 49162000  T
119 attcaaat-------------cactcttttgaagccacgctcccaaacaaatttcaatcc 165  Q
    | ||||||             |||||||||||||||||||||||||||||| ||||||||    
49162001 actcaaatcaacatgaagctccactcttttgaagccacgctcccaaacaaacttcaatcc 49162060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 49162070 - 49162107
Alignment:
163 tccccaaagttccaccacaaatgcactacaacaccata 200  Q
    ||||||||||||||| ||||||||| ||||||||||||    
49162070 tccccaaagttccactacaaatgcattacaacaccata 49162107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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