View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_high_23 (Length: 342)
Name: NF10080_high_23
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 199 - 330
Target Start/End: Original strand, 49162364 - 49162496
Alignment:
| Q |
199 |
tatattttttgagaaaccacaaattcattcgccattatttccgcacaatatccct-ccacaagttgcactcaagttacctttagaagtgttgtcgatgtt |
297 |
Q |
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| T |
49162364 |
tatatttttagagaaaccacaaattcattcgccattatttccgcacaatataccttccacaagttgcactcaagttacccttagaagtgttgtcgatgtt |
49162463 |
T |
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| Q |
298 |
aagactaacccagcccatcactggtgatgtcca |
330 |
Q |
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| T |
49162464 |
aagactaacccagcccatcactggtggtgtcca |
49162496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 49161901 - 49162060
Alignment:
| Q |
19 |
acctcaatccattacaagaagtcggtcaatgttttgaagcaaaatacaaccagcactgctctacacttattagagttgatcgaactaacaatacaatcaa |
118 |
Q |
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| T |
49161901 |
acctcaatccattataagaagtcagtcaaggttttgaagcaaagtacaaccagcactgctctacacttattagagttgatctaactaacaatacaatcaa |
49162000 |
T |
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| Q |
119 |
attcaaat-------------cactcttttgaagccacgctcccaaacaaatttcaatcc |
165 |
Q |
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| T |
49162001 |
actcaaatcaacatgaagctccactcttttgaagccacgctcccaaacaaacttcaatcc |
49162060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 49162070 - 49162107
Alignment:
| Q |
163 |
tccccaaagttccaccacaaatgcactacaacaccata |
200 |
Q |
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| T |
49162070 |
tccccaaagttccactacaaatgcattacaacaccata |
49162107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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