View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10080_high_29 (Length: 309)
Name: NF10080_high_29
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 27603156 - 27603440
Alignment:
| Q |
17 |
atcttcaaccccttgatttcctctcaacagtgtgtagaccgataccccagtcctaatgtttcagtcagtccattcaagccatcccaatttgggatttata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27603156 |
atcttcaaccccttgatttcctctcaacagtgtgtagaccgataccccagtcctaatgtttcagtcagtccattcaagccatcccaatttgtgatttata |
27603255 |
T |
|
| Q |
117 |
atcttgaattttgtagaagtgttgggtcactctcaaatttccaacttgttgtgcacatctctacgtcgccttcgagattaggacaagataaggaaaacaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27603256 |
atcttgaattttgtagaagtgttgggtcactctcaaatttccaacttgttgtgcacatctctacctcgccttcgagattaggacaagataaggaaaacaa |
27603355 |
T |
|
| Q |
217 |
gaatcagagtagtagcaatgtgagtagtggaggggacatctcttgggttgacttgtacttgcctaggttggttcagccctttgct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27603356 |
gaatcagagtagtagcaatgtgagtagtggaggggacatctcttgggttgacttgtacttgcctaggttggttcagccctatgct |
27603440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 60 - 294
Target Start/End: Complemental strand, 52211155 - 52210921
Alignment:
| Q |
60 |
accccagtcctaatgtttcagtcagtccattcaagccatcccaatttgggatttataatcttgaattttgtagaagtgttgggtcactctcaaatttcca |
159 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||| |
|
|
| T |
52211155 |
accccggttctaatgtttcagtcagtccattcaagccatcccaatttggggtttataatcttgaaaattgtaaaagtgttggctcactctcaaatttcca |
52211056 |
T |
|
| Q |
160 |
acttgttgtgcacatctctacgtcgccttcgagattaggacaagataaggaaaacaagaatcagagtagtagcaatgtgagtagtggaggggacatctct |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || |||| ||||||||||||||| || |||||||||| |
|
|
| T |
52211055 |
acttgttgtgcacatctctacgtcgccttcgagattaggaaatgataaggaaaacaagaatgcgaatagttgcaatgtgagtagtgtagaggacatctct |
52210956 |
T |
|
| Q |
260 |
tgggttgacttgtacttgcctaggttggttcagcc |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
52210955 |
tgggttgacttgtacttgcctaggttggttcagcc |
52210921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University