View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10080_high_3 (Length: 812)

Name: NF10080_high_3
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10080_high_3
NF10080_high_3
[»] chr8 (1 HSPs)
chr8 (16-796)||(7455975-7456773)


Alignment Details
Target: chr8 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 16 - 796
Target Start/End: Complemental strand, 7456773 - 7455975
Alignment:
Q  16 acatcagtagactgtatttcactaatgcaacttttttaaatatattttgacattagcgtgggctctttgacgctaaaagcttaaattacaacaataatgt 115  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7456773 acatcagtagactgtatttcactgctgcaacttttttaaatatattttgacattagcgtgg-ctctttgacgctaaaagcttaaattacaacaataatgt 7456675  T
Q  116 gggcctgaccgaggctcactagtgtcggtgcatctgacactattgttagtgtcaactatttattaatagatcgtagtgtctgcttagcgccggcttaata 215  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7456674 gggcctgaccgaggctcactagtgtcggtgtatctgacactattgttagtgtcaattatttattaatagatcgtagtgtctgcttagcgccggcttaata 7456575  T
Q  216 tacaataattaaagtgtcgactgaaaaaagtgaacgatgctgttagctttgagccttttagagtgtgccacgacatttggcgctaaatcgttgcaagtgt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7456574 tacaataattaaagtgtcgactgaaaaaagtgaacgatgctgttagctttgagccttttagagtgtgccacgacatttggcgctaaatcgttgcaagtat 7456475  T
Q  316 caacttttggcctattaacctgagctttatgccgacgctaaagccaattttctagtggtaatttgtatt---------atacgaagt-nnnnnnnggtac 405  Q
    || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||         |||||||||        |||||    
T  7456474 catcttttggcctattaacctgagctttatgctgacgctaaagccaattttctagtggtaatttgtattatacatattatacgaagtaaaacaaaggtac 7456375  T
Q  406 cctctaagtgtgagatttgagtgtaaagtgtgaaaataaaaaattctgattttcgtaaattatgatttgttatgatataatttggattaaatgcatcaac 505  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7456374 cctctaagcgtgagatttgagtgtaaagtgtgaaaataaaaaattatgattttcgtaaattatgatttgttatgatataatttggattaaatgcatcaac 7456275  T
Q  506 cctttttgatcaatttttggaccaaatacattaattttctttaatcaatttttgttcatatttaaggcgaagtagtatttacaatacctac--------t 597  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||        |    
T  7456274 cctttttgatcagtttttggaccaaatacattaattttctttaatcagtttttgttcatatttgaggcgaagtagtatttacaatacctacttttgagtt 7456175  T
Q  598 ttttaataaataattgatgttacttacttcatgctcttggatcatgtttaactctcgtccctccaggcgtctcttagaacttagaagatagttgtcattc 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7456174 ttttaataaataattgatgttacttacttcatgctcttggatcatgtttaactctcgtccctccaggtgtctcttagaacttagaagatagttgtcattc 7456075  T
Q  698 cttaaaaattttggcattggaaatggtctaactgggtatcatccatta-nnnnnnncttggtgtcccttctgtaaaaaatgtggaggggcaacatctttt 796  Q
    |||||||| |||||||||||||||||||||||||| |||| ||  |||        ||||||||||||||||||||||||||||||||| ||||||||||    
T  7456074 cttaaaaaatttggcattggaaatggtctaactggatatcgtcatttattttttttcttggtgtcccttctgtaaaaaatgtggaggggtaacatctttt 7455975  T

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