View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10080_high_36 (Length: 286)
Name: NF10080_high_36
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 1471511 - 1471771
Alignment:
| Q |
19 |
atttacaggtccaaattgcactattatatcatgtcaatatacagagaattcattcagaggtaaaaatgaaaagtcttcaatacatttaccaaacatatta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1471511 |
atttacaggtccaaattgcactattatatcatgtcaatatacagagaattcattcagaggtaaaaatgaaaagtcttcaatacatttaccaaacatatta |
1471610 |
T |
|
| Q |
119 |
aatatcaggaagacataatggaaaactttgaaagtaggtggtgtggaaaatgaattgttgaaattgacattttggaactcaatttgtgtgacgtatttgt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1471611 |
aatatcaggaagacataatggaaaactttgaaagtaggtggtgtggaaaatgaattgttgaaattgacattttggaactcaatttctgtgacgtatttgt |
1471710 |
T |
|
| Q |
219 |
ttgagagaatctagacttattttagtacacaactctaaagtttgttaattggcctttgctt |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1471711 |
ttgagagaatctagacttattttagtacacaactctaaagtttgttaattggcctttgctt |
1471771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University