View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_high_46 (Length: 250)
Name: NF10080_high_46
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 37489277 - 37489041
Alignment:
| Q |
1 |
caatcagaggaaaagacactggaaaccatctgaagatatgagattttccattatggagggtgtaagtagcaccggcatagcaggacctctgtaagttaat |
100 |
Q |
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| T |
37489277 |
caatcagaggaaaagacactggaaaccatctgaagatatgagattttccattatggagggtgtaagtagcaccggcatagcaggacctctgtaagttaat |
37489178 |
T |
|
| Q |
101 |
tctgcaggtggagtcgaatcgtcgagtcttgttttaatctccgaaagaagtttacccttttgcttgaattaatgtgatggaaatgatattagctaggctt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37489177 |
tctgcaggtggagtagaatcgtcgagtcttgttttaatctccgaaagaagtttacccttttgcttgaattaatgtgatggaaatgatattagctaggctt |
37489078 |
T |
|
| Q |
201 |
cggccatctcaaaagtccaatccagaacattacgcct |
237 |
Q |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
37489077 |
cggccatctcaaaagtccaatcaagaacattacgcct |
37489041 |
T |
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