View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_high_47 (Length: 249)
Name: NF10080_high_47
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 42199894 - 42199645
Alignment:
| Q |
6 |
cagattgcaaaatcctgatcaaaccaaaccaaattgctgacatccacggtttagaaaccacattaaatgtggcata--------------caactcagaa |
91 |
Q |
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| T |
42199894 |
cagattgcaaaatcctgatcaaaccaaaccaaattgctgacatccacggtttagaaaccacattaaatgtggcatacaagcaacaacttccaactcagaa |
42199795 |
T |
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| Q |
92 |
aaatgtggccccgacttaaataaaatgactttggactgagttcattnnnnnnnnnnnnnnnnnnnncagaaatggactttatgaataaaatttatttgga |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42199794 |
aaatgtggccccgacttaaataaaatgactttggactgagttcattaaaaaaacaagaaaaaaaaacagaaatggactttatgaataaaatttatttgga |
42199695 |
T |
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| Q |
192 |
ccgaattcatttaaagaaataaaatagcttttactattcttaccctatgc |
241 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42199694 |
cctaattcattaaaagaaataaaatagcttttactattcttaccctatgc |
42199645 |
T |
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