View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10080_high_49 (Length: 245)

Name: NF10080_high_49
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10080_high_49
NF10080_high_49
[»] chr4 (8 HSPs)
chr4 (1-141)||(16411218-16411360)
chr4 (140-234)||(26093274-26093367)
chr4 (142-234)||(5024515-5024607)
chr4 (141-209)||(22735168-22735236)
chr4 (141-215)||(7717987-7718058)
chr4 (142-210)||(1933209-1933277)
chr4 (143-200)||(36155687-36155744)
chr4 (142-234)||(31982679-31982771)
[»] chr3 (2 HSPs)
chr3 (141-234)||(41078972-41079065)
chr3 (142-234)||(4663883-4663975)
[»] chr1 (2 HSPs)
chr1 (141-234)||(2620192-2620285)
chr1 (142-209)||(28989666-28989733)
[»] chr6 (6 HSPs)
chr6 (142-234)||(31386997-31387089)
chr6 (141-234)||(12838591-12838684)
chr6 (142-209)||(6428087-6428154)
chr6 (142-226)||(31202826-31202910)
chr6 (143-215)||(25991254-25991326)
chr6 (142-207)||(32093389-32093454)
[»] chr8 (3 HSPs)
chr8 (141-234)||(45470188-45470281)
chr8 (143-234)||(37094431-37094522)
chr8 (142-209)||(17506146-17506213)
[»] scaffold0006 (1 HSPs)
scaffold0006 (136-227)||(187567-187658)
[»] chr5 (2 HSPs)
chr5 (142-234)||(17524063-17524155)
chr5 (141-209)||(27768988-27769056)
[»] scaffold0174 (1 HSPs)
scaffold0174 (140-234)||(33964-34058)
[»] chr2 (2 HSPs)
chr2 (142-234)||(37441378-37441470)
chr2 (142-234)||(27407970-27408062)
[»] chr7 (2 HSPs)
chr7 (142-220)||(21493647-21493725)
chr7 (141-234)||(29914528-29914621)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 16411218 - 16411360
Alignment:
Q  1 acataaataatcattgtctctgcagttgttaaaataatgtatgtgctattcactacttaaaataggacaagtggaaattaacact--aaaactaatagtt 98  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  16411218 acataaattatcattctctctgcagttgttaaagtaatgtatgtgctattcactacttaaaataggacaagtggaaattaacactaaaaaactaatagtt 16411317  T
Q  99 tcttttaatattccctatgtatcaaaatgatagtcgtttaaga 141  Q
    |||||||||||||| | ||| ||||| ||||||||||||||||    
T  16411318 tcttttaatattccatctgtctcaaactgatagtcgtttaaga 16411360  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 26093274 - 26093367
Alignment:
Q  140 gacactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||| |||||    
T  26093274 gacactacaagaaatttgcttattactggcggaaataagccctcaataatgcac-aaatttgtcagtaatggatattactgagggattggtgtcc 26093367  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 5024607 - 5024515
Alignment:
Q  142 cactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||| |||||||||||||||||| |||||    
T  5024607 cactacaagaaatttgcttattactggcggaaataaaccctcaataatgcacaaaatctgttagtaatagatattactgagggattggtgtcc 5024515  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 22735168 - 22735236
Alignment:
Q  141 acactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22735168 acactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccctcagtaat 22735236  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 7718058 - 7717987
Alignment:
Q  141 acactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatat 215  Q
    |||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  7718058 acactacaagaaatttgcttatt---ggcggaaataaaccctcaataatgcacaaaatctgtcagtaatggatat 7717987  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 1933209 - 1933277
Alignment:
Q  142 cactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatg 210  Q
    |||||||||||||||| |||||| | |||||||||| ||||||||||||||||||||| ||||||||||    
T  1933209 cactacaagaaatttgtttattatttgcggaaataaaccctcaataatgcacaaaatctgtcagtaatg 1933277  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 36155744 - 36155687
Alignment:
Q  143 actacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatcc 200  Q
    |||||||||| ||||||||||| || ||||| ||| |||||||||| ||| |||||||    
T  36155744 actacaagaattttgcttattattgacggaattaaaccctcaataaagcataaaatcc 36155687  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 31982771 - 31982679
Alignment:
Q  142 cactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    ||||||||||| ||||  | |||||||||||| ||| ||| || ||||| | ||||||| ||||||||  | |||||||| |||||| |||||    
T  31982771 cactacaagaattttgtgttttactggcggaattaaacccccagtaatggagaaaatccctcagtaatacacattactgacggattggtgtcc 31982679  T

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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 41079065 - 41078972
Alignment:
Q  141 acactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41079065 acactacaagaaatttgctcattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 41078972  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 4663883 - 4663975
Alignment:
Q  142 cactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    ||||||||||| ||| | | |||||||| ||| ||| |||||| ||||||| || |||| |||||||||   |||||||  ||||||||||||    
T  4663883 cactacaagaatttttcattttactggcagaactaaaccctcactaatgcaaaacatccctcagtaatgcccattactggcggattgatgtcc 4663975  T

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Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 2620285 - 2620192
Alignment:
Q  141 acactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2620285 acactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatctgtcagtaatggatattactgagggattgatgtcc 2620192  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 28989666 - 28989733
Alignment:
Q  142 cactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaat 209  Q
    ||||||||||| |||| || |||| ||||||||||| ||||||||||||| |||||||| || |||||    
T  28989666 cactacaagaattttggtttttaccggcggaaataatccctcaataatgcccaaaatccctcggtaat 28989733  T

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Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 31386997 - 31387089
Alignment:
Q  142 cactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31386997 cactacaagaaatttgctcattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 31387089  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 12838591 - 12838684
Alignment:
Q  141 acactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    ||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||    
T  12838591 acactgcaagaaatttacttattactggcggaaataaaccctcaataatgcacaaaatctgtcagtaattgatattactgaggaattgttgtcc 12838684  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 6428087 - 6428154
Alignment:
Q  142 cactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  6428087 cactacaagaaatttgcttattactggcggaaataagccctcagtaatgcacaaaatctgtcagtaat 6428154  T

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Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 31202910 - 31202826
Alignment:
Q  142 cactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggat 226  Q
    ||||||||||| |||||||||||||||| ||| ||| |||| |||||||||||||||| |||||||||| |||||||||||||||    
T  31202910 cactacaagaattttgcttattactggctgaactaaacccttaataatgcacaaaatctgtcagtaatgaatattactgagggat 31202826  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 25991254 - 25991326
Alignment:
Q  143 actacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatat 215  Q
    |||||||||||||||||||||| |||| ||||||| |||| |||||||||||||||| |||||||||||||||    
T  25991254 actacaagaaatttgcttattattggcagaaataaacccttaataatgcacaaaatctgtcagtaatggatat 25991326  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 32093454 - 32093389
Alignment:
Q  142 cactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagta 207  Q
    ||||||||||| ||||| | |||||||| ||| ||| |||||||||||||| ||||||| ||||||    
T  32093454 cactacaagaattttgcattttactggcagaattaaaccctcaataatgcaaaaaatccctcagta 32093389  T

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Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 45470281 - 45470188
Alignment:
Q  141 acactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45470281 acactacaagaaatttgcttattactagcggaaataagctctcaataatgcacaaaatctgtcagtaatggatattactgagggattgatgtcc 45470188  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 37094431 - 37094522
Alignment:
Q  143 actacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    ||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37094431 actacaagaaatttgattattactgacggaaataaaccctcaataatgcacaaaatctgtcagtaatggatattactgagggattgatgtcc 37094522  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 17506213 - 17506146
Alignment:
Q  142 cactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaat 209  Q
    ||||||||||| |||| || |||||||| ||||||| |||||| ||||||| ||||| | ||||||||    
T  17506213 cactacaagaattttggtttttactggcagaaataatccctcagtaatgcaaaaaattcatcagtaat 17506146  T

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Target: scaffold0006 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 187567 - 187658
Alignment:
Q  136 ttaagacactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggatt 227  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  187567 ttaagacactacaagaaatttgtttattactggcggaaataaaccctcaataatgcacaaaatctgtcagtaatggatattactgagggatt 187658  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 17524063 - 17524155
Alignment:
Q  142 cactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    |||||||||||| | |||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  17524063 cactacaagaaaatagcttattactggcggaaaaaaaccctcaataatgcacaaaatctgtcagtaatggatattactgagggattggtgtcc 17524155  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 27769056 - 27768988
Alignment:
Q  141 acactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaat 209  Q
    |||||||||||| |||| ||  |||| |||||||||| |||||||||||||  ||||||| ||| ||||    
T  27769056 acactacaagaattttggtttctactagcggaaataatccctcaataatgccaaaaatccctcaataat 27768988  T

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Target: scaffold0174 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 34058 - 33964
Alignment:
Q  140 gacactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    |||||||||| |||||||||||||| || ||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |||||    
T  34058 gacactacaaaaaatttgcttattattgacggaaataaaccctcaataatgcataaaatctgtcagtaatggatattactgagggattggtgtcc 33964  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 37441470 - 37441378
Alignment:
Q  142 cactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    |||||||||||||| |||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||| |||||    
T  37441470 cactacaagaaattagcttattactagcggaaataaaccctcaataatgtacaaaatctgtcagtaatggatattactgtgggattggtgtcc 37441378  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 27407970 - 27408062
Alignment:
Q  142 cactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    ||||||||||| ||||  | |||||| ||||| ||| |||||| ||||| | ||||||| ||||||||  | |||||||| |||||| |||||    
T  27407970 cactacaagaattttgtgttttactgacggaattaaaccctcagtaatggagaaaatccctcagtaatacacattactgacggattggtgtcc 27408062  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 21493647 - 21493725
Alignment:
Q  142 cactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactg 220  Q
    ||||||||||||| || || |||||||||||||||| |||||| ||| ||  ||||||| |||||| |  |||||||||    
T  21493647 cactacaagaaatctggtttttactggcggaaataatccctcagtaacgccaaaaatccctcagtagtacatattactg 21493725  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 29914528 - 29914621
Alignment:
Q  141 acactacaagaaatttgcttattactggcggaaataagccctcaataatgcacaaaatccgtcagtaatggatattactgagggattgatgtcc 234  Q
    |||||||||||| ||||  | |||||||||||| ||| |||||| ||||| | ||||||| ||||||||  | |||| ||| |||||| |||||    
T  29914528 acactacaagaattttgtgttttactggcggaattaaaccctcagtaatggagaaaatccctcagtaatacacattaatgacggattggtgtcc 29914621  T

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