View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10080_high_5 (Length: 633)
Name: NF10080_high_5
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 46526181 - 46526440
Alignment:
| Q |
1 |
gtttatattattatgcccataaaaaagaaagagtggtaagtcatacacactgacacacaattccaatacgcaacaatgttaatgttcgttcattaattac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46526181 |
gtttatattattatgcccataaaaaagaaagagttgtaagtcatacacactgacacacaattccaatacgcaacaatgtcaatgttcgttcattaattac |
46526280 |
T |
|
| Q |
101 |
atttttatactatattgttagtttcttgttatttgcatgtaatgcattgcatgtcactttattttcctcccatcttttcaatctcagactcagagaatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46526281 |
atttttatactatattgttagtttcttgttatttgcatgtaatgcattgcatgtcactttattttcctcccatcttttcaatctcagactcagagaatgt |
46526380 |
T |
|
| Q |
201 |
acagcgcctagtacaagatgaaatgaaataaaattcttccaagatttgataccatatacc |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46526381 |
acagcgcctagtacaagatgaaatgaaataaaattctgccaagatttgataccatatacc |
46526440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 369 - 617
Target Start/End: Original strand, 46526555 - 46526803
Alignment:
| Q |
369 |
agaaccattgcatgagatttgtaatggttttgagtagaaaaaataactttgaacttgttttgtcataagtgaaagtttcttcattattgtctacagaact |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46526555 |
agaaccattgcatgagatttgtaatggttttgagtagaaaaaataactttgaacttgttttgtcataagtgaaagtttcttcattattgtctagagaact |
46526654 |
T |
|
| Q |
469 |
agctagcaagtacaaatgaaggaagaaactggatttgaatctcaactagcttcatgtttttcttcctcttgcaaaagtcttgtgtttccttctaggcctg |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46526655 |
agctagcaagtacaaatgaaggaagaaactggacttgaatctcaactagcttcatgtttttcttcctcttgcaaaagtctcgtgtttccttctaggcctg |
46526754 |
T |
|
| Q |
569 |
actatggcaaacttggaacaaagtgtgttgtcaaagctaattacttcct |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46526755 |
actatggcaaacttggaacaaagtgtgttgtcaaagctaattacttcct |
46526803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University