View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_high_51 (Length: 241)
Name: NF10080_high_51
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_51 |
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| [»] scaffold0418 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40982846 - 40983066
Alignment:
| Q |
1 |
ttaatgtacacccacaaaatttgattaaggagtattttaacaagttacaactaaaaacagttaaatgtaccttaatgtgcatattgttaaaatacctctt |
100 |
Q |
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| T |
40982846 |
ttaatgtacatccacaaaatttgattaaggagtattttaataagttataactaaaaacagttaaatgtaccttaatgtgcatattgttaaaatacctctt |
40982945 |
T |
|
| Q |
101 |
ttaacaaataagtgagtgtaagttaacaatttctgaagacacttgctagaatacactcactcaattttaaaaggagtaagttagtaagtgataactaaaa |
200 |
Q |
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| T |
40982946 |
ttaacaaataagtgggtgtaagtcaacagtttctcaagacacttgctagaatacactcactcaattttaaaaggagtaagttagtaagtgataactaaaa |
40983045 |
T |
|
| Q |
201 |
atatgttaaatacactttaag |
221 |
Q |
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||||||| ||||||||||||| |
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| T |
40983046 |
atatgttgaatacactttaag |
40983066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 40961669 - 40961718
Alignment:
| Q |
162 |
caattttaaaaggagtaagttagtaagtgataactaaaaatatgttaaat |
211 |
Q |
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| T |
40961669 |
caattttagaaggagtaagttatcaagtgataactaaaaatttgttaaat |
40961718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 32716493 - 32716413
Alignment:
| Q |
143 |
ttgctagaatacactcactcaattttaa-aaggagtaagttagtaagtg-ataactaaaaatatgttaaatacactttaag |
221 |
Q |
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| T |
32716493 |
ttgctagaatacacccacttatttttaagaaggagtattttagtaagtgaataactaaaaagtggttaaatacaccttaag |
32716413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 221
Target Start/End: Complemental strand, 26043120 - 26042958
Alignment:
| Q |
60 |
gttaaatgtaccttaatgtgcatattgttaaaatacctcttttaacaaataagtgagtgtaagttaacaatttctgaagacacttgctagaatacactca |
159 |
Q |
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||||||| ||||||| ||| |||||| |||||||| ||| ||| ||||||||| ||||| |||||||| | || || || ||||||| |||||| || |
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| T |
26043120 |
gttaaatacaccttaaggtgaatattgctaaaatacaccttctaaaaaataagtgggtgtatgttaacaactcctataggcatttgctaggatacaccca |
26043021 |
T |
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| Q |
160 |
ctcaatttt-aaaaggagtaagttagtaagtgataactaaaaatatgttaaatacactttaag |
221 |
Q |
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| T |
26043020 |
cttattttttaaaaggtgtgttttagcaagttataactaaaaagtagttaaatacaccttaag |
26042958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0418 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0418
Description:
Target: scaffold0418; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 161
Target Start/End: Complemental strand, 5863 - 5762
Alignment:
| Q |
60 |
gttaaatgtaccttaatgtgcatattgttaaaatacctcttttaacaaataagtgagtgtaagttaacaatttctgaagacacttgctagaatacactca |
159 |
Q |
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| T |
5863 |
gttaaatataccttaaggtgaatgttgctaaaacacaccttctaaaaaataagtgggtgtaagttagcaactcctatagacatttgctagaatacaccca |
5764 |
T |
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| Q |
160 |
ct |
161 |
Q |
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|| |
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|
| T |
5763 |
ct |
5762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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