View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10080_high_52 (Length: 241)
Name: NF10080_high_52
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8345474 - 8345250
Alignment:
| Q |
1 |
aatccatgaattaaattaaatactcttcaatctaagggttaatatgttctctcaactctccacgatagtcaataagatattaatctcacttgatat---- |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
8345474 |
aatccatgaattaaattaaatactcttcaatcaaagggttaatatgttctctcaactctgcacaata---aataagacattaatctcacttgatatgccc |
8345378 |
T |
|
| Q |
97 |
ctcaaatgataaaaacagaacacatcacaaacatgcttttgtaacttcattcaagagtatttcaacttgtttgattaagaatgaaagagaggctgacatg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8345377 |
ctcaaatgataaaaacagaacacatcacaaacatgcttttgtaacttcattcaagagtatttcaacttgtttgattaagaatgaaagagaggctgacatg |
8345278 |
T |
|
| Q |
197 |
aattattaagtgaaaaataaggttagagg |
225 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |
|
|
| T |
8345277 |
aattattaagtg-aaaataagtttagagg |
8345250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 8348264 - 8348098
Alignment:
| Q |
1 |
aatccatgaattaaattaaatactcttcaatctaagggttaatatgttctctcaactctccacgatagtcaataagatattaatctcacttgatatctca |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
8348264 |
aatccataaattaaattaaatactcttcaatctaagggttaatatgttctctcaactctccacaata----ataagatattaatctcacttgatatctca |
8348169 |
T |
|
| Q |
101 |
aatgataaaaacagaacacatcacaaacatgcttttgtaacttcattcaagagtatttcaacttgtttgat |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8348168 |
aatgataaaaacagaacacatcacaaacatgcttttgtaacttgattcaagagtatttcaacttgtttgat |
8348098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 8338845 - 8338682
Alignment:
| Q |
5 |
catgaattaaattaaatactcttcaatctaagggttaatatgttctctcaactctccacgatagtcaataagatattaatctcacttgatat----ctca |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||||||| | || |
|
|
| T |
8338845 |
catgaattaaattaactactcttcaatctaagggttaatatgttctctcaactctc----at----gataagacattcatctcacttgatatgacccaca |
8338754 |
T |
|
| Q |
101 |
aatgataaaaacagaacacatcacaaacatgcttttgtaacttcattcaagagtatttcaacttgtttgatt |
172 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| |||||||||| || ||||| |||| ||||||||||||| |
|
|
| T |
8338753 |
aatgattaaaacacaacacatcacaaacatgcctttgtaacttgtttgaagagcattttaacttgtttgatt |
8338682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 8345609 - 8345554
Alignment:
| Q |
5 |
catgaattaaattaaatactcttcaatctaagggttaatatgttctctcaactctc |
60 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8345609 |
catgaattaaattaactactcttcaatctaagggttaatatgttctctcaactctc |
8345554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 8348053 - 8347984
Alignment:
| Q |
160 |
aacttgtttgattaa----gaatgaaagagaggctgacatgaattattaagtgaaaaataaggttagagg |
225 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8348053 |
aacttgtttgattaattaggaatgaaagagaggctgacgtgaattattaagtgaaaaataaggttagagg |
8347984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 8338645 - 8338583
Alignment:
| Q |
156 |
tttcaacttgtttgattaagaatgaaa-gagaggctgacatgaattattaagtgaaaaataag |
217 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||||||| ||||| ||||||||| ||||||| |
|
|
| T |
8338645 |
tttcaacttgtttgattaggaatgaaacgaaaggctgacgtgaataattaagtgagaaataag |
8338583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 8345536 - 8345491
Alignment:
| Q |
121 |
tcacaaacatgcttttgtaacttcattcaagagtatttcaacttgt |
166 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
8345536 |
tcacaaacatgcttttgtaacttgtttgaagagcatttcaacttgt |
8345491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University