View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_high_53 (Length: 241)
Name: NF10080_high_53
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_53 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 37489616 - 37489386
Alignment:
| Q |
17 |
agtacatgtaattttttatataagaaagcgtactagtatat-------catatattttattgtgcaattaatgctaaccaaaacaatacatatattttgt |
109 |
Q |
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| T |
37489616 |
agtacatgtaattttt-atataagaaagtgtactagtatatagtatatcatatattttattgtgcaattaatgttaaccaaaacaatacatatattttgt |
37489518 |
T |
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| Q |
110 |
ccgacttcaaatcttgactaacaattcttgatcaaattttacttatcaaaaggttgacttgaattccaagtcacatgataacaacttcaactgcattgtg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
37489517 |
ccgacttcaaatcttgactaacaattcttgatcaaattttacttatcaaaaggttgacttgaactccaagtcacatgataacaacttcaactccattgtg |
37489418 |
T |
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| Q |
210 |
tcaaacttctttaatatattgacattctaatt |
241 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
37489417 |
tcaaacttctttaatatattgacattctaatt |
37489386 |
T |
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