View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_high_54 (Length: 239)
Name: NF10080_high_54
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 50559174 - 50559070
Alignment:
| Q |
118 |
aattcaatcacaattcgtttcgtttgattctatttaaacaatttgttggttccgattctgattttgaacaggtgtattgagtgccgacgtttatgctcgt |
217 |
Q |
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| T |
50559174 |
aattcaatcgcaattcgtctcgtttgattctatttaaacaatttgttggttccgattctgattttgaacaggtgtgttgagtgccgacgtttatgctcgt |
50559075 |
T |
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| Q |
218 |
tactg |
222 |
Q |
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||||| |
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| T |
50559074 |
tactg |
50559070 |
T |
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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 2065223 - 2065171
Alignment:
| Q |
20 |
ctattttctcaaaccaaaacaaaattacacttaaaacattttcatgcacaaca |
72 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2065223 |
ctattttctcaaaccaaaacaaaattacacttaaaacattttcatgcacaaca |
2065171 |
T |
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