View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_high_6 (Length: 565)
Name: NF10080_high_6
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 31 - 277
Target Start/End: Original strand, 43482697 - 43482944
Alignment:
| Q |
31 |
ctcttattttttcttc-atcaagagtgaacccaaagatgcatagtggacnnnnnnntcggaggcctggtttgattgtttattattttttggtgagtaggc |
129 |
Q |
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| T |
43482697 |
ctcttattttttcttccatcaagagtgaacccaaagatgcatagtggacaaaaaaatcggaggcctagtttgattgtttattattttttggtgagtaggc |
43482796 |
T |
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| Q |
130 |
aaagtttagttgtaatgacaaatgagtatgttatgatgattatgaatgttccattcatcctaaaatagagaaggtggcatgttaatttattcatctacac |
229 |
Q |
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| T |
43482797 |
aaagtttagttgtaatgacaaatgagtatgttatgatgattatgaatgttccattcatcctaaaatagagaaggtggcatgttaatttattcatctacac |
43482896 |
T |
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| Q |
230 |
cgaatagagctctttatttttgtttgtacaacccgtatagaggtctct |
277 |
Q |
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| T |
43482897 |
cgaatagagctctttatttttgtttgtacaacccgtatagaggtctct |
43482944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 375 - 552
Target Start/End: Original strand, 43483030 - 43483207
Alignment:
| Q |
375 |
aaagatggtatctggcaaagtgtcggtgtcggagataatgaatggaaaggaagatacgcagaattgggtttcatttatacctttttatttacgctccatt |
474 |
Q |
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| T |
43483030 |
aaagatggtatctggcaaagtgtcggtgtcggagataatgaatggaaaggaagatacgcagaattgggtttcatttatacatttttatttacgctccatt |
43483129 |
T |
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| Q |
475 |
tgtttcaatttcaaccgtgacccgtgatgttcaacaaaggatctgcgnnnnnnnacttttcatctgtgtttttactct |
552 |
Q |
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| T |
43483130 |
tgtttcaatttcaaccgtgacccgtgatgttcaacaaaggatctgcgtttttttacttttcatctgtgtttttactct |
43483207 |
T |
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