View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_high_62 (Length: 221)
Name: NF10080_high_62
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_62 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 3557064 - 3557281
Alignment:
| Q |
1 |
cattgcttctacttcacaaacttcaccattttcttcacaacttcnnnnnnnnnttcctctccattctcttcaagcttccaacatccttctttgctcttct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3557064 |
cattgcttctacttcacaaacttcaccattttcttcacaacttcaaaaaaaaaatcctctccattctcttcaagcttccaacatccttctttgctcttct |
3557163 |
T |
|
| Q |
101 |
cgttctcttcctattagcttacaatgctttcaccgttttctgcattcacattcctcatcattactccccacacaaacctctccttcttcctccaccatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3557164 |
cgttctcttcctattagcttacaatgctttcaccgttttctgcattcacattcctcatcattactccccacacaaacctctccttcttcctccaccatca |
3557263 |
T |
|
| Q |
201 |
cacaccaacaccaaactc |
218 |
Q |
| |
|
|||||||| ||||||||| |
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|
| T |
3557264 |
cacaccaaaaccaaactc |
3557281 |
T |
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