View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_high_8 (Length: 527)
Name: NF10080_high_8
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_high_8 |
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| [»] scaffold0152 (1 HSPs) |
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Alignment Details
Target: scaffold0152 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Original strand, 10891 - 11376
Alignment:
| Q |
18 |
aacatttacccctccaatgaagtttaaaattgaaagaaactacaatccaacgtatttgattcatgttattcctttgcctttagtgcatgacttgatgaat |
117 |
Q |
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| T |
10891 |
aacatttacccctccaatgaagtttaaaattgaaagaaactacaatccaacgtatttgattcatgttgttcctttgcctttagtgcatgacttgatgaat |
10990 |
T |
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| Q |
118 |
ttccaatttatttatgagaaaaagttgtcagctgatgagattaaggatggctatatggtaggttgtcatgtatacttttgttttctttctaatatccata |
217 |
Q |
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| T |
10991 |
ttccaatttatttatgagaaaaagttgtcagttgatgagattaaggatggctatatggtaggttgtcatgtatacttttgttttctttctaatatccata |
11090 |
T |
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| Q |
218 |
attcagtacataaaacatggtttaattggatgacaaggagtattcctaatcttttttccttcttttcatcatacagacccttgcttatagtggattttgt |
317 |
Q |
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| T |
11091 |
attcagtacataaaacatggtttaattggatgacaaggagtattcctaatattttttccttcttttcatcatacagacccttgcttatagtggattttgt |
11190 |
T |
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| Q |
318 |
gagctcacgcttgatatagcggcgatgcctgcgctgaagatggtagatgactgtgaaaatttgtgggagtgtactctggtctttgagagacgtccttatg |
417 |
Q |
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| T |
11191 |
gagctcacgcttgatata---gcgatgcctgcgctgaagatggtagatgactgtgaaaatttgtgggagtgtactctggtctttgagagacgtccttatg |
11287 |
T |
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| Q |
418 |
ttcagtttaaaattgatagtggtttttcaatcgaatggttcttgctagaaaggctttgtgaaggttctaatgtgatggtttggtgcacaggtt |
510 |
Q |
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| T |
11288 |
ttcagtttaaaattgatagtgg--tttcaatcgaatggttcttgctag-aaggctttgtgaaggttctaatgtgatgg-ttggtgcaccggtt |
11376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 139 - 338
Target Start/End: Complemental strand, 2889074 - 2888876
Alignment:
| Q |
139 |
aagttgtcagctgatgagattaaggatggctatatggtaggttgtcatgtatacttttgttttctttctaatatccataattcagtacataaaacatggt |
238 |
Q |
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| T |
2889074 |
aagttgtcagctgatgagattaaggatgactatatggtcggttgtcatgtatacttttgttttctttctaatatccataattcagtagataaaacatggt |
2888975 |
T |
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| Q |
239 |
ttaattggatgacaaggagtattcctaatcttttttccttcttttcatcatacagacccttgcttatagtggattttgtgagctcacgcttgatatagcg |
338 |
Q |
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| T |
2888974 |
ttaattggatgacaaggagtattcctaatattttttccttcttttcatcatacagaccctt-cttatagtggattttgtgagctcacgcttgatatagcg |
2888876 |
T |
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