View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10080_low_1 (Length: 1049)
Name: NF10080_low_1
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 967; Significance: 0; HSPs: 32)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 967; E-Value: 0
Query Start/End: Original strand, 19 - 1037
Target Start/End: Complemental strand, 22620620 - 22619602
Alignment:
| Q |
19 |
gatttgcctcttcatcttaaatcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22620620 |
gatttgcctcttcatcttaaatcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctg |
22620521 |
T |
|
| Q |
119 |
aagggtttgtaaaagaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcact |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22620520 |
aagggtttgtaaaagaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcact |
22620421 |
T |
|
| Q |
219 |
aagaatcgatggaaaaacaataagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagt |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22620420 |
aagaatcgatggaaaaacaaaaagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagt |
22620321 |
T |
|
| Q |
319 |
gaagattgtcattcatctttaagtgaagttactcgacgcctatcaatagcaaccaattccaatgattttatggcatgcactnnnnnnnnctcaagtgttc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22620320 |
gaagattgtcattcatctttaagtgaagttactcgacgcctatcaatagcaaccaattccaatgattttatggcatgcactaaaaaaaactcaagtgttc |
22620221 |
T |
|
| Q |
419 |
gatcactaatggttttcacagaaaatttagaccgatgctctctgaggaggttctatacaaaatgtaggcgattgaaggtgcttcattttgaaaatgataa |
518 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22620220 |
ggtcactaatggttttcacagaaaatttagaccgatgctctctgaggaagttctatacaaaatgtaggcgattgaaggtgcttcattttgaaaatgataa |
22620121 |
T |
|
| Q |
519 |
ttggtttatgggtgatgaagatttgagaagtttgatccacttgaaatatttaagctgcaagaattcttcgggggatggatatgtatatctttccaaatca |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22620120 |
ttggtttatgggtgatgaagatttgagaagtttgatccacttgaaatatttaagctgcaagaattcttcgggggatggatacgtatatctttccaaatca |
22620021 |
T |
|
| Q |
619 |
attgccatgctccaaaacctagagactttggatctaaggggggttaatgttaggttctatgatataccaaaggagactataatgttcagaaagctgcgac |
718 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22620020 |
attgccatgctccaaaacctagagaccttggatctaaggggggttaatgttaggttctatgatataccaaaggagactagaatgttcagaaagctgcgac |
22619921 |
T |
|
| Q |
719 |
attttcgtggttacaaaatctctttgtttcaattgaagggttgtataggaggcatggaatcgctacaaacgctaagtgaggtggaaatagatagcaatta |
818 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22619920 |
atttttgtggttacaaaatctctttgtttcaattgaagggttgtataggaggcatggaatcgctacaaacgctaagtgaggtggaaatagatagcaatta |
22619821 |
T |
|
| Q |
819 |
tgaggatggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatct |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22619820 |
tgaggatggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatct |
22619721 |
T |
|
| Q |
919 |
tccgtattgaatgagctgcgacacttggagaaactacgcattgggaaaaaatttggatactactctgtttatgttcatgatgttattgattttcatttgg |
1018 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22619720 |
tccgtattgaatgagctgcgacacttggagaaactacgcattgggaaaaaatttggatactactctgtttatgttcatgatgttattgattttcatttgg |
22619621 |
T |
|
| Q |
1019 |
tttcatcccctcctatgct |
1037 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
22619620 |
tttcatcccctcctatgct |
22619602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 22656790 - 22656423
Alignment:
| Q |
19 |
gatttgcctcttcatcttaaatcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctg |
118 |
Q |
| |
|
||||||||| || ||||||| |||||||| |||||||||||| ||||||||||||||||| ||||||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
22656790 |
gatttgcctttttatcttaagtcatgtttgttgtattttggaatatatccagaagattatgaagttgaatcaaagagagtgatacggcaatggatagctg |
22656691 |
T |
|
| Q |
119 |
aagggtttgtaaaagaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcact |
218 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | || ||||||| |||||||| ||| | |
|
|
| T |
22656690 |
aaggttttgtgaaagaagaaagggggaaaactttggaagaagttgcagaaggatatttaacagagttgattcgccgatgtttggtacaagtatcctcagt |
22656591 |
T |
|
| Q |
219 |
aagaatcgatggaaaaacaataagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagt |
318 |
Q |
| |
|
||||| || |||||||| | ||||||||| || |||||| |||||| ||||||||| |||||||||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
22656590 |
tagaattgacggaaaaactaaaagttgttgtgtccatgatttaatacatatgatgatccttgaaaagtgtgaggatttaagtttctgcaagcatattagt |
22656491 |
T |
|
| Q |
319 |
gaagattgtcattcatctttaagtgaagttactcgacgcctatcaatagcaaccaattccaatgattt |
386 |
Q |
| |
|
| |||| | ||||||||| |||||| | ||| |||||||||||||||| || | |||||||||||||| |
|
|
| T |
22656490 |
gcagatggccattcatctataagtggaattattcgacgcctatcaatatcagctaattccaatgattt |
22656423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 22647908 - 22647540
Alignment:
| Q |
19 |
gatttgcctcttcatcttaaatcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctg |
118 |
Q |
| |
|
||||||||| | |||||||| ||||||| || ||||||||| | ||||| ||||||||| |||||| || | |||| || |||| || ||| |||||| |
|
|
| T |
22647908 |
gatttgcctttctatcttaaaccatgtttcttatattttggaatgtatcccgaagattatgaagttggatcgaggagactgtttcgacagtgggtagctg |
22647809 |
T |
|
| Q |
119 |
aagggtttgtaaaagaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcact |
218 |
Q |
| |
|
|||| ||||| ||||||||||||||| |||| |||||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
22647808 |
aaggatttgtgaaagaagaaagggggtataccttggaagaagttgcagaacgatatttaactgagttgatccatagaagtttggttcaagtatcttcagt |
22647709 |
T |
|
| Q |
219 |
aagaatcgatggaaaaacaataagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagt |
318 |
Q |
| |
|
||||| ||||||||||| | |||||| || ||||||||||| |||| ||||||||| ||||||||| |||||||| ||||||| |||||| |||||||| |
|
|
| T |
22647708 |
tagaattgatggaaaaactaaaagttgctgtgttcatgatctgatacatatgatgatccttgaaaagagtgaggatataagtttctgcaagcatattagt |
22647609 |
T |
|
| Q |
319 |
gaagattgtcattcatctttaagtgaagttactcgacgcctatcaatagcaaccaattccaatgatttt |
387 |
Q |
| |
|
|||||| || |||||||||| |||| | | |||||||| ||| || ||||| ||||||| |||||| |
|
|
| T |
22647608 |
gaagatgatctttcatctttatttgaaatcattcgacgccattcattaacaacctattccaaagatttt |
22647540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 40 - 322
Target Start/End: Complemental strand, 30989008 - 30988726
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||| |||||| ||||||||||||| || || || |||| |
|
|
| T |
30989008 |
tcatgcttgttgtattttggaatatatccagaagattatgaagttaaatcaaagagattgattcgacaatgggtagctgaagggttcgtgaaggaggaaa |
30988909 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaat |
239 |
Q |
| |
|
| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||| | ||||| ||| | | |
|
|
| T |
30988908 |
gagggaagactttggaagacgttgcagaaggatatttaacagagttgatccatagaagcttggtgcaagtatcttcggttagagttgatggtaaagctaa |
30988809 |
T |
|
| Q |
240 |
aagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtgaag |
322 |
Q |
| |
|
| ||||| | ||||||||||||||||| ||||| |||||||| | ||||||| ||| |||||||||| ||| ||||||| |
|
|
| T |
30988808 |
aggttgtcgtgttcatgatctaatacgcgatatgatccttgaaaaatttgaggatttaaatttttgcaagcttatcagtgaag |
30988726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 52 - 264
Target Start/End: Original strand, 21946399 - 21946611
Alignment:
| Q |
52 |
tattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaagggggaatactt |
151 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| | || |||||| ||||||| ||||||||||||||||||||||| || || ||||| ||||| |||| |
|
|
| T |
21946399 |
tattttggagtatatccagaagattatgaagttaaatcgaagagagtgattcgacaatggatagctgaagggtttgtgaaggaggaaagagggaagactt |
21946498 |
T |
|
| Q |
152 |
tggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaataagttgttgcgt |
251 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||| ||| | | | ||||| | || |
|
|
| T |
21946499 |
tggaagaagtggcagaaggatatttaacagagttgatccatagaagcctggttcaagtatcttcacttagaattgatggtaaagctaaaggttgtcgtgt |
21946598 |
T |
|
| Q |
252 |
tcatgatctaata |
264 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21946599 |
tcatgatctaata |
21946611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 40 - 320
Target Start/End: Original strand, 22053469 - 22053749
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||||| ||||| |||||||| || ||||||| ||||||||||| ||||||||||| || || |||| |
|
|
| T |
22053469 |
tcatgcttgttgtattttggagtatatccagaagattatgaagttaattcaaagcgagtgattcgacaatggatagcagaagggtttgtgaaggaggaaa |
22053568 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaat |
239 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||| ||||| ||||| ||| | | |
|
|
| T |
22053569 |
aggggaagactttggaagaagtggcagaaggatatttatcagagttgatccatagaagcctggttcaagtatcttcacttagaattgatggcaaagctaa |
22053668 |
T |
|
| Q |
240 |
aagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtga |
320 |
Q |
| |
|
| | ||| | |||||||||||||||| | ||||| |||||| | |||||||| | | ||||| |||| |||||||||| |
|
|
| T |
22053669 |
aggatgtcgtgttcatgatctaatacacaatatgatccttgaagaaagtgaggattttaatttttccaagcatattagtga |
22053749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 40 - 320
Target Start/End: Original strand, 22105471 - 22105751
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
||||| || ||||| |||||| ||||||||||||||||| ||||| | || |||||| ||| ||| ||||||||||||||||||||||| || || |||| |
|
|
| T |
22105471 |
tcatgcttgttgtactttggagtatatccagaagattatgaagttaaatcgaagagagtgactcgacaatggatagctgaagggtttgtgaaggaggaaa |
22105570 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaat |
239 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||| |||||||| || || ||||| ||||| ||||| | |
|
|
| T |
22105571 |
aggggaagactttggacgaagtggcagaaggatatttaacagagttgatccatagaagcctggttcaagtatcctcgcttagaattgatggcaaaactaa |
22105670 |
T |
|
| Q |
240 |
aagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtga |
320 |
Q |
| |
|
| ||||| | |||||||||||||||||| ||||| |||| |||| ||||||| | | |||||||||| |||||||||| |
|
|
| T |
22105671 |
aggttgtcgtgttcatgatctaatacgtgatatgatccttgcaaagaatgaggattttaatttttgcaagcatattagtga |
22105751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 49 - 265
Target Start/End: Original strand, 21931193 - 21931409
Alignment:
| Q |
49 |
ttgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaagggggaata |
148 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| | ||||||||| ||| ||| ||||||||||||||||||||||| || || |||| ||||| | |
|
|
| T |
21931193 |
ttgtattttggagtatatccagaagattatgaagttaaatcaaagagagtgactcgacaatggatagctgaagggtttgtcaaggaggaaaaggggatga |
21931292 |
T |
|
| Q |
149 |
ctttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaataagttgttg |
248 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||| | || |||||||||||||| ||||| ||||| ||| | | | ||||| | |
|
|
| T |
21931293 |
ctttggaagaagtggcagaaggatatttaacagagttgatccatagaagcctcgttcaagtatcttcacttagaattgatggcaaagctaaaggttgtcg |
21931392 |
T |
|
| Q |
249 |
cgttcatgatctaatac |
265 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21931393 |
tgttcatgatctaatac |
21931409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 40 - 316
Target Start/End: Complemental strand, 22467666 - 22467390
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||| |||| ||||||||| |||| ||| |||||||| |||||||||||||| || ||||| | |
|
|
| T |
22467666 |
tcatgtttcttgtattttggattatatcctgaagactatatagttcattcaaagacgttgactcgccaatggattgctgaagggtttgtgaaggaagaca |
22467567 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaat |
239 |
Q |
| |
|
|||||| || |||||||| ||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||| |||| || ||||||| | || |
|
|
| T |
22467566 |
gggggaggacattggaagaggttgctgaaggatatttaatagagttgatccatagaagtttggtgcaagtagtttcaataagtattgatggaagagtaaa |
22467467 |
T |
|
| Q |
240 |
aagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatatta |
316 |
Q |
| |
|
||||||| | |||||||||||| | | | ||||| ||||| || | ||||||| |||||||||||||| |||||| |
|
|
| T |
22467466 |
aagttgtcgtgttcatgatctagtgcatgcaatgatccttgataaatatgaggatttaagtttttgcaagaatatta |
22467390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 22628255 - 22628045
Alignment:
| Q |
23 |
tgcctcttcatcttaaatcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagg |
122 |
Q |
| |
|
||||| || |||||||||||||| | | |||||||||| ||||||||||| ||||| | ||||| ||||||||||||||||| |||| |||||||||||| |
|
|
| T |
22628255 |
tgcctttttatcttaaatcatgtgtgtcgtattttggactatatccagaatattatgaggttgaatcaaagagattgattcgacaattgatagctgaagg |
22628156 |
T |
|
| Q |
123 |
gtttgtaaaagaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaaga |
222 |
Q |
| |
|
||||| |||||||||||||| || ||||| |||||||| |||||||||| ||||||||| |||| || ||||||||||||||||||| ||||| ||| |
|
|
| T |
22628155 |
atttgtgaaagaagaaaggggaaaaactttcgaagaagtcacagaaggatatttaacagag-tgat-tatcgaagtttggtgcaagtatcgtcacttaga |
22628058 |
T |
|
| Q |
223 |
atcgatggaaaaa |
235 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
22628057 |
attgatggaaaaa |
22628045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 49 - 320
Target Start/End: Original strand, 22028772 - 22029043
Alignment:
| Q |
49 |
ttgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaagggggaata |
148 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| | ||||||||| ||||||| ||||||||||||||||||||||||| || |||| || ||| | |
|
|
| T |
22028772 |
ttgtattttggagtatatccagaagattatgaagttaaatcaaagagagtgattcgacaatggatagctgaagggtttgtaagggaggaaaaggagaaga |
22028871 |
T |
|
| Q |
149 |
ctttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaataagttgttg |
248 |
Q |
| |
|
||||| ||||||| ||||| ||||| | | |||||||||| ||||||| ||||||||||||||||||| | ||| ||||| ||| | | | | ||| | |
|
|
| T |
22028872 |
ctttgcaagaagtggcagagggatatctcatagagttgatcaatagaagcctggtgcaagtatcttcacttaaaattgatggcaaagctaaaggatgtcg |
22028971 |
T |
|
| Q |
249 |
cgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtga |
320 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||| |||||||| | | |||||||||| || ||||||| |
|
|
| T |
22028972 |
tgttcatgatctaatacgcaatatgatccttgaaaaaagtgaggattttaatttttgcaagcatgttagtga |
22029043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 49 - 320
Target Start/End: Original strand, 22187760 - 22188031
Alignment:
| Q |
49 |
ttgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaagggggaata |
148 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| | ||||||||| ||||||| ||||||||||||||||||||||||| || |||| || ||| | |
|
|
| T |
22187760 |
ttgtattttggagtatatccagaagattatgaagttaaatcaaagagagtgattcgacaatggatagctgaagggtttgtaagggaggaaaaggagaaga |
22187859 |
T |
|
| Q |
149 |
ctttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaataagttgttg |
248 |
Q |
| |
|
||||| ||||||| ||||| ||||| | | |||||||||| ||||||| ||||||||||||||||||| | ||| ||||| ||| | | | | ||| | |
|
|
| T |
22187860 |
ctttgcaagaagtggcagagggatatctcatagagttgatcaatagaagcctggtgcaagtatcttcacttaaaattgatggcaaagctaaaggatgtcg |
22187959 |
T |
|
| Q |
249 |
cgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtga |
320 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||| |||||||| | | |||||||||| || ||||||| |
|
|
| T |
22187960 |
tgttcatgatctaatacgcaatatgatccttgaaaaaagtgaggattttaatttttgcaagcatgttagtga |
22188031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 40 - 266
Target Start/End: Original strand, 22115848 - 22116074
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
|||||||| |||||||||||| |||| |||||||||| | ||||| | ||||||||| | | ||| ||||||||||||||||||||||| || || |||| |
|
|
| T |
22115848 |
tcatgtttgttgtattttggagtatacccagaagattttgaagttaaatcaaagagaatcactcgacaatggatagctgaagggtttgtgaaggaggaaa |
22115947 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaat |
239 |
Q |
| |
|
|||| || ||| |||| ||||| ||||| ||||| ||||||||||||||||||||||| |||| ||||||||||| || ||||| ||||| ||| | | |
|
|
| T |
22115948 |
ggggaaagactatggatgaagtggcagagggatatataacagagttgatccatagaagtatggttcaagtatcttcgcttagaattgatggcaaagctaa |
22116047 |
T |
|
| Q |
240 |
aagttgttgcgttcatgatctaatacg |
266 |
Q |
| |
|
| ||||| | |||||||||| |||||| |
|
|
| T |
22116048 |
aggttgtcgtgttcatgatcaaatacg |
22116074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 40 - 314
Target Start/End: Complemental strand, 22430885 - 22430611
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| |||| |||| ||||||||| ||| | | | |||||||| |||||||||||||| |||||| ||| |
|
|
| T |
22430885 |
tcatgtttcttgtattttggattatatcctaaagactatatagtttattcaaagacattaacttgtcaatggattgctgaagggtttgtgaaagaaaaaa |
22430786 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaat |
239 |
Q |
| |
|
||| | || ||| |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||| || ||||||| | || |
|
|
| T |
22430785 |
cgggaaggacattgaaagaggttgcagaaggatatttaatagagttgatccatagaagtttggtgcaagtagattcaataagtattgatggaagagtaag |
22430686 |
T |
|
| Q |
240 |
aagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatat |
314 |
Q |
| |
|
||||||| | |||||||||||| | | | ||||| ||| |||| | ||||||| |||| ||||| |||||||| |
|
|
| T |
22430685 |
aagttgtcgtgttcatgatctagtgcatgaaatgatccttaaaaaatatgaggatttaagcttttgtaagtatat |
22430611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 40 - 320
Target Start/End: Original strand, 22180180 - 22180460
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||| ||||| | || |||||| | | ||| |||||||||||||||||||||| || || |||| |
|
|
| T |
22180180 |
tcatgtttgttgtattttggagtatatccagaggattatgaagttaaatcgaagagagtaactcgaaaatggatagctgaagggtttgtgaaggaggaaa |
22180279 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaat |
239 |
Q |
| |
|
||| || || |||||||||| ||||| ||||| |||||||||||||||||||||| |||| ||||||||||| || ||||| ||||| ||| | | |
|
|
| T |
22180280 |
agggaaaaacaatggaagaagtggcagagggatatctaacagagttgatccatagaagcctggttcaagtatcttcgcttagaattgatggcaaagctaa |
22180379 |
T |
|
| Q |
240 |
aagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtga |
320 |
Q |
| |
|
| ||||| | |||||||||||||||||| ||||| ||| |||| ||||||| | | |||||||||| |||||||||| |
|
|
| T |
22180380 |
aggttgtcgtgttcatgatctaatacgtgatatgatccttcaaaaaaatgaggattttaatttttgcaagcatattagtga |
22180460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 32 - 342
Target Start/End: Complemental strand, 22614982 - 22614672
Alignment:
| Q |
32 |
atcttaaatcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaa |
131 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| |||||||| ||| || |||| || |||| | | |||| || |||||||||||||||||||| || |
|
|
| T |
22614982 |
atcttagatcatgtttgttgtattttggattatacccagaagactatgaaattgaatctaagatactacttcgtcagtggatagctgaagggtttgtgaa |
22614883 |
T |
|
| Q |
132 |
agaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatgga |
231 |
Q |
| |
|
||| ||||||||||| || || ||||||||||| ||| || ||| |||||||||| ||||||||||||||||| | ||||| | | || |||||| |
|
|
| T |
22614882 |
agaggaaagggggaagacattagaagaagttgcggaaacttatttatcagagttgattaatagaagtttggtgcaaatctcttcgattaatattgatgga |
22614783 |
T |
|
| Q |
232 |
aaaacaataagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtgaagattgtcatt |
331 |
Q |
| |
|
||| | ||||||| | |||||||||||| ||||| ||||||| ||||||| | | ||||| ||||||||||| ||||||||||||| |||| | |
|
|
| T |
22614782 |
aaagttaaaagttgtcgtgttcatgatctattacgtgtgatgatctttgaaaaatttaaggatttaagtttttgctgccatattagtgaagacagtcagt |
22614683 |
T |
|
| Q |
332 |
catctttaagt |
342 |
Q |
| |
|
|||| |||||| |
|
|
| T |
22614682 |
catccttaagt |
22614672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 40 - 315
Target Start/End: Complemental strand, 22635221 - 22634946
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||| |||| |||||| | ||||| ||| |||||||| ||||||||||| || |||||||| | |
|
|
| T |
22635221 |
tcatgtttcttgtattttggattatatcctgaagactatatagttcgttcaaaaacattgactcgccaatggattgctgaagggttcgtgaaagaagaca |
22635122 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaat |
239 |
Q |
| |
|
|||| | || || ||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| || || ||||||| | || |
|
|
| T |
22635121 |
ggggaaggacatttgaagaggttgcagaaggatatttagtagagttgatccatagaagtttggtgcaagtagtttcaactagtattgatggaagagtaaa |
22635022 |
T |
|
| Q |
240 |
aagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatatt |
315 |
Q |
| |
|
|||||| |||||||||||||| | | | ||||| ||||| || | | ||||| |||||||||||||| ||||| |
|
|
| T |
22635021 |
aagttgccgcgttcatgatctagtgcatgaaatgatccttgacaaatttaaggatttaagtttttgcaagaatatt |
22634946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 43 - 373
Target Start/End: Complemental strand, 22436343 - 22436013
Alignment:
| Q |
43 |
tgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaaggg |
142 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| |||| |||| |||||| | ||||| ||| |||||||| ||||||||||| || |||||||| |||| |
|
|
| T |
22436343 |
tgtttcttgtattttggattatatcctgaagactatatagttcgttcaaaaacattgactcgccaatggattgctgaagggttcgtgaaagaagagaggg |
22436244 |
T |
|
| Q |
143 |
ggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaataag |
242 |
Q |
| |
|
| | || |||||||| ||||| ||||||| |||| ||||||| || |||||||||||||||| ||| |||| |||| || ||||||| | || ||| |
|
|
| T |
22436243 |
gaaggacattggaagatattgcaaaaggatatttaatagagttggtcaatagaagtttggtgcatgtagtttcaataagtattgatggaagagtaaaaag |
22436144 |
T |
|
| Q |
243 |
ttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtgaagattgtcattcatctttaagt |
342 |
Q |
| |
|
|||| | ||||||||| || | | | ||||| ||||| || | ||||||| |||||||||||||| |||||| ||| || ||| | ||||||| | |
|
|
| T |
22436143 |
ttgtcgtgttcatgatttagtgcatgcaatgatccttgagaaatatgaggatttaagtttttgcaagaatattactgaggacaatcaattttctttaact |
22436044 |
T |
|
| Q |
343 |
gaagttactcgacgcctatcaatagcaacca |
373 |
Q |
| |
|
||| ||||||||||||||||| ||||||| |
|
|
| T |
22436043 |
agagtgactcgacgcctatcaatggcaacca |
22436013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 40 - 320
Target Start/End: Original strand, 21937916 - 21938196
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||| | || || |||||||| | ||||| ||||||||||||||||| ||||| || || |||| |
|
|
| T |
21937916 |
tcatgcttgttgtattttggagtatatccagaagattttgaaattagaccaaagagagtcattcgacaatggatagctgaaggatttgtgaaggaggaaa |
21938015 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaat |
239 |
Q |
| |
|
||| || ||| |||||||||| ||||| ||||| ||||||||||||| |||||||| |||| |||||||| ||||| ||||| ||||| ||| | | |
|
|
| T |
21938016 |
agggaaagactatggaagaagtggcagagggatatctaacagagttgatacatagaagcctggttcaagtatcctcacttagaattgatggcaaagctaa |
21938115 |
T |
|
| Q |
240 |
aagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtga |
320 |
Q |
| |
|
| ||||| | |||||||||||||||||| ||||| |||||||| ||||||| | | |||||||||| |||| ||||| |
|
|
| T |
21938116 |
aggttgtcgtgttcatgatctaatacgtgatatgatccttgaaaaagatgaggattttaatttttgcaagcatatcagtga |
21938196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 22357717 - 22357547
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| ||||||||| ||||||||| ||||| ||| |||||||| |||||||||||||| ||| || | |
|
|
| T |
22357717 |
tcatgtttcttgtattttggattatatcctgaagactataaagttcattcaaagacattgactcgacaatggattgctgaagggtttgtgaaacaatatg |
22357618 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagta |
210 |
Q |
| |
|
||| | || ||||||| |||||||||||||| |||| |||||| || ||||||||||||||||||||| |
|
|
| T |
22357617 |
gggaaagaacgatggaagaggttgcagaaggatatttaaaagagttaatacatagaagtttggtgcaagta |
22357547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 40 - 370
Target Start/End: Complemental strand, 22458204 - 22457874
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| || || |||| | |||| | | |||||||||||||||| |||||||| ||||| ||||| || | |
|
|
| T |
22458204 |
tcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatactgattcggcaatggatggctgaaggatttgtgaaagatgata |
22458105 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaat |
239 |
Q |
| |
|
|| || || |||||||| |||||||| ||||| |||||||| |||||| |||| |||||||||||||| |||| | || || ||||||| | ||| |
|
|
| T |
22458104 |
tggtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaa |
22458005 |
T |
|
| Q |
240 |
aagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtgaagattgtcattcatcttta |
339 |
Q |
| |
|
||||||||| ||||||||||| | | | |||| |||||||| ||||| || |||||||||||||| ||||||| || ||| || ||||||||| |
|
|
| T |
22458004 |
aagttgttgtgttcatgatctggtgcatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatcttta |
22457905 |
T |
|
| Q |
340 |
agtgaagttactcgacgcctatcaatagcaa |
370 |
Q |
| |
|
|||| | |||||||||||||||||||| |
|
|
| T |
22457904 |
agtgggatggttcgacgcctatcaatagcaa |
22457874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 40 - 370
Target Start/End: Complemental strand, 22481185 - 22480855
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| || || |||| | |||| | | |||||||||||||||| |||||||| ||||| ||||| || | |
|
|
| T |
22481185 |
tcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatactgattcggcaatggatggctgaaggatttgtgaaagatgata |
22481086 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaat |
239 |
Q |
| |
|
|| || || |||||||| |||||||| ||||| |||||||| |||||| |||| |||||||||||||| |||| | || || ||||||| | ||| |
|
|
| T |
22481085 |
tggtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaa |
22480986 |
T |
|
| Q |
240 |
aagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtgaagattgtcattcatcttta |
339 |
Q |
| |
|
||||||||| ||||||||||| | | | |||| |||||||| ||||| || |||||||||||||| ||||||| || ||| || ||||||||| |
|
|
| T |
22480985 |
aagttgttgtgttcatgatctggtgcatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatcttta |
22480886 |
T |
|
| Q |
340 |
agtgaagttactcgacgcctatcaatagcaa |
370 |
Q |
| |
|
|||| | |||||||||||||||||||| |
|
|
| T |
22480885 |
agtgggatggttcgacgcctatcaatagcaa |
22480855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 51 - 211
Target Start/End: Complemental strand, 18966679 - 18966519
Alignment:
| Q |
51 |
gtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaagggggaatact |
150 |
Q |
| |
|
|||||||||| ||| |||| |||||||| || || ||| |||| || | ||||| ||||||||||||||||||||||| || || ||||| ||||| ||| |
|
|
| T |
18966679 |
gtattttggagtatgtccataagattatgaaattaatttaaagcgagtaattcgacaatggatagctgaagggtttgtgaaggaggaaagcgggaagact |
18966580 |
T |
|
| Q |
151 |
ttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtat |
211 |
Q |
| |
|
||||||||| |||||||||||| | ||| |||||| ||||||||||| ||||||||||||| |
|
|
| T |
18966579 |
ttggaagaaattgcagaaggattcctaatagagttaatccatagaagcttggtgcaagtat |
18966519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 22367639 - 22367469
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||| | || ||| |||||| | ||||| ||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
22367639 |
tcatgtttcttgtactttggattatatcctgaagactcaaatgttcgttcaaatatattgactcgtcaatggattgctgaagggtttgtgaaagaagaaa |
22367540 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagta |
210 |
Q |
| |
|
|||| | || |||||||| |||||||||||| | |||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
22367539 |
ggggaatgacattggaagaggttgcagaaggacatttaatagagttgatccgtagaagtttggtgcgagta |
22367469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 49 - 266
Target Start/End: Original strand, 22035289 - 22035506
Alignment:
| Q |
49 |
ttgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaagggggaata |
148 |
Q |
| |
|
|||||||||||| ||||||||||||||| | ||||| | ||||||||| ||| ||| ||||||||||||||||||||| | || || |||| ||| || | |
|
|
| T |
22035289 |
ttgtattttggagtatatccagaagattttgaagttaaatcaaagagagtgactcgacaatggatagctgaagggtttatgaaggaggaaaagggaaaga |
22035388 |
T |
|
| Q |
149 |
ctttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaataagttgttg |
248 |
Q |
| |
|
| |||||||| | || || ||||| ||| |||||||||||||||||| |||| |||||||| || || ||||| ||||| ||| | | | ||||| | |
|
|
| T |
22035389 |
caatggaagaactggctgagggatatctaatagagttgatccatagaagcctggttcaagtatcctcgcttagaattgatggcaaagctaaaggttgtcg |
22035488 |
T |
|
| Q |
249 |
cgttcatgatctaatacg |
266 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22035489 |
tgttcatgatctaatacg |
22035506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 40 - 316
Target Start/End: Complemental strand, 22353527 - 22353251
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| || ||||| ||||| | | ||||| ||| |||||||| ||||| |||||||| |||||| | |
|
|
| T |
22353527 |
tcatgtttcttgtattttggattatatctcgaagactacgaagtttattcagatacattgactcgtcaatggattgctgaggggtttgtgaaagaatacg |
22353428 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaat |
239 |
Q |
| |
|
|||| | || ||||||| |||||||||||||| |||| |||||| |||||||||||||||||||||||| |||| | || || ||||||| | || |
|
|
| T |
22353427 |
ggggaaggacaatggaagaggttgcagaaggatatttaaaagagttaatccatagaagtttggtgcaagtagattcagtcagtattgatggaagagtaaa |
22353328 |
T |
|
| Q |
240 |
aagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatatta |
316 |
Q |
| |
|
||||||| | ||||| |||||| | | | ||||| ||| ||| | ||||||| |||||||||||||| |||||| |
|
|
| T |
22353327 |
aagttgtcgtgttcacgatctagtgcatgaaatgatccttagaaaatatgaggatttaagtttttgcaagaatatta |
22353251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 22442457 - 22442287
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| ||| ||| | |||||||| ||||| ||| ||||||||||||||||||||||| |||||| | |
|
|
| T |
22442457 |
tcatgtttcttgtattttggattatatcccgaagactatgaagcttgttcaaagacattgactcgtcaatggatagctgaagggtttgtgaaagaatatg |
22442358 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagta |
210 |
Q |
| |
|
||| | || |||||| | |||||||||||||| |||| || ||| ||| ||||||||||||||||||| |
|
|
| T |
22442357 |
gggaaaggacattggaaaaggttgcagaaggatatttaaaagtgttaatctgtagaagtttggtgcaagta |
22442287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 22630156 - 22629986
Alignment:
| Q |
40 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
139 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| |||| |||| ||||||| |||| ||| |||||||| |||||||||||||| ||||||| | |
|
|
| T |
22630156 |
tcatgtttcttgtattttggattctatcctgaagactatatagttcgttcaaaggtgttgactcgccaatggatcgctgaagggtttgtgaaagaagtca |
22630057 |
T |
|
| Q |
140 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagta |
210 |
Q |
| |
|
||| | || |||||||| |||| ||||||||| |||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
22630056 |
agggaagaacattggaagaggttggagaaggatatttaatagagttggtccgtagaagtttggtgcaagta |
22629986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 818 - 955
Target Start/End: Complemental strand, 22647109 - 22646972
Alignment:
| Q |
818 |
atgaggatggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatc |
917 |
Q |
| |
|
|||||||||||||||||||| | | ||| | | ||| ||| | ||||||||||||||||||||| | | || ||||| ||||| ||||| ||||| |
|
|
| T |
22647109 |
atgaggatggaatagagttattgagagagctcgaaaatctgaagaagttaaggaaattgggtttggataatattcagagagagcatgggagcgcgttatc |
22647010 |
T |
|
| Q |
918 |
ttccgtattgaatgagctgcgacacttggagaaactac |
955 |
Q |
| |
|
|||| ||||||| ||| |||| |||||||||||||||| |
|
|
| T |
22647009 |
ttccttattgaaggagttgcggcacttggagaaactac |
22646972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 852 - 955
Target Start/End: Complemental strand, 22614183 - 22614080
Alignment:
| Q |
852 |
aaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttccgtattgaatgagctgcgacacttggagaaa |
951 |
Q |
| |
|
|||||||| ||||||||| |||| || |||||| || |||||||||| |||||||| | | ||||||| || | |||||| ||| ||||||||||||| |
|
|
| T |
22614183 |
aaagttgaagcagttaagagaattaggcttggttcgtcttagaagagagcatggaagtgttctatcttctttagtcaatgagatgcaacacttggagaaa |
22614084 |
T |
|
| Q |
952 |
ctac |
955 |
Q |
| |
|
|||| |
|
|
| T |
22614083 |
ctac |
22614080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 22208855 - 22208952
Alignment:
| Q |
106 |
caatggatagctgaagggtttgtaaaagaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggt |
203 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| |||| || || || |||||||| |||| ||| ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
22208855 |
caatgggtagcggaagggtttgtcaaagaggaaacaggaaaaacggtggaagaaattgcggaacaatatttaacagagttgatccatagaaggttggt |
22208952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 656
Target Start/End: Complemental strand, 22614410 - 22614367
Alignment:
| Q |
613 |
aaatcaattgccatgctccaaaacctagagactttggatctaag |
656 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
22614410 |
aaatccattggcatgctccaaaacctagagactttggatgtaag |
22614367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 3e-85; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 34989959 - 34990311
Alignment:
| Q |
19 |
gatttgcctcttcatcttaaatcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctg |
118 |
Q |
| |
|
||||||||| || |||||||||||||||| || ||||||||| | ||||||||||||||| ||||| | ||||||||| |||| | ||||||||||||| |
|
|
| T |
34989959 |
gatttgcctttttatcttaaatcatgtttgttatattttggaatgtatccagaagattatgaagttaaatcaaagagaatgatacaacaatggatagctg |
34990058 |
T |
|
| Q |
119 |
aagggtttgtaaaagaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcact |
218 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| |||||||||||||||| |||| |||| |||||||||||||| | ||||||||||||||||||||| ||| | |
|
|
| T |
34990059 |
aagggtttgtgaaagaggaaagtgggaagactttggaagaagttgaagaaagatatttaacagagttgattcgtagaagtttggtgcaagtatcctcagt |
34990158 |
T |
|
| Q |
219 |
aagaatcgatggaaaaacaataagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagt |
318 |
Q |
| |
|
|| || ||||||||||| | ||||||||| ||||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||||| || | | | |
|
|
| T |
34990159 |
tagcattgatggaaaaactagaagttgttgtgttcatgatctgatacatatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaat |
34990258 |
T |
|
| Q |
319 |
gaagattgtcattcatctttaagtgaagttactcgacgcctatcaatagcaac |
371 |
Q |
| |
|
|| || ||||||||||||||||| | || ||||||||||||||||||| |
|
|
| T |
34990259 |
gatgacgatcattcatctttaagtggaactatcagacgcctatcaatagcaac |
34990311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 32 - 373
Target Start/End: Original strand, 34983237 - 34983578
Alignment:
| Q |
32 |
atcttaaatcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaa |
131 |
Q |
| |
|
|||||||||| ||||| || ||||||||| | |||||| ||| |||| ||||| | ||||||||| |||||| || |||||||||||||||||||| || |
|
|
| T |
34983237 |
atcttaaatcgtgtttgttatattttggaatgtatccaaaaggttatgaagttaaatcaaagagagtgattctacagtggatagctgaagggtttgtgaa |
34983336 |
T |
|
| Q |
132 |
agaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatgga |
231 |
Q |
| |
|
|| ||||| || || |||||||||||||||||| ||||||| |||||||||||||| | | ||||||||||||||||||| ||| | ||||| |||||| |
|
|
| T |
34983337 |
ggaggaaagtggcaagactttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtgcaagtatcctcagttagaattgatgga |
34983436 |
T |
|
| Q |
232 |
aaaacaataagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtgaagattgtcatt |
331 |
Q |
| |
|
|| | | ||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||| || | | ||||||| |||||| |
|
|
| T |
34983437 |
aagcctaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcatt |
34983536 |
T |
|
| Q |
332 |
catctttaagtgaagttactcgacgcctatcaatagcaacca |
373 |
Q |
| |
|
|||||||||||| | || | ||||||||||||||||||||| |
|
|
| T |
34983537 |
catctttaagtggaactattagacgcctatcaatagcaacca |
34983578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 32 - 371
Target Start/End: Original strand, 34976126 - 34976465
Alignment:
| Q |
32 |
atcttaaatcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaa |
131 |
Q |
| |
|
|||||||||| ||||| || ||||||||| | |||||| ||| |||| ||||| | ||||||||| |||||| || |||||||||||||||||||| || |
|
|
| T |
34976126 |
atcttaaatcgtgtttgttatattttggaatgtatccaaaaggttatgaagttaaatcaaagagagtgattctacagtggatagctgaagggtttgtgaa |
34976225 |
T |
|
| Q |
132 |
agaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatgga |
231 |
Q |
| |
|
|| ||||| || || |||||||||||||||||| ||||||| |||||||||||||| | | ||||||||||||||||||| ||| | ||||| |||||| |
|
|
| T |
34976226 |
ggaggaaagtggcaagactttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtgcaagtatcctcagttagaattgatgga |
34976325 |
T |
|
| Q |
232 |
aaaacaataagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtgaagattgtcatt |
331 |
Q |
| |
|
|| | | ||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||| || | | ||||||| |||||| |
|
|
| T |
34976326 |
aagcctaaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcatt |
34976425 |
T |
|
| Q |
332 |
catctttaagtgaagttactcgacgcctatcaatagcaac |
371 |
Q |
| |
|
|||||||||||| | || | ||||||||||||||||||| |
|
|
| T |
34976426 |
catctttaagtggaactattagacgcctatcaatagcaac |
34976465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 2305209 - 2304850
Alignment:
| Q |
19 |
gatttgcctcttcatcttaaatcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctg |
118 |
Q |
| |
|
||||||||| || |||||||||| ||||| | ||||||||| | ||||||||||||||| ||||| | ||||||||| ||||||| || |||||||||| |
|
|
| T |
2305209 |
gatttgcctttttatcttaaatcgtgtttgta-tattttggaatgtatccagaagattatgaagttaaatcaaagagagtgattcgacagtggatagctg |
2305111 |
T |
|
| Q |
119 |
aagggtttgtaaaagaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcact |
218 |
Q |
| |
|
|||||||||| || || ||||| ||||| |||||||||||||||||||||||||| ||| |||||||||| | | ||||||||||||||||||| ||| | |
|
|
| T |
2305110 |
aagggtttgtgaaggaggaaagtgggaagactttggaagaagttgcagaaggatatttatcagagttgattcgtcgaagtttggtgcaagtatcctcagt |
2305011 |
T |
|
| Q |
219 |
aagaatcgatggaaaaacaataagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagt |
318 |
Q |
| |
|
|| || ||||||||| | | ||||||||| ||||||||||| |||||||| ||| | || ||||||||||||||| ||||||||| |||| || | | | |
|
|
| T |
2305010 |
tagcattgatggaaaatctaaaagttgttgtgttcatgatctgatacgtataatgttcctagaaaagtgtgaggatttaagttttttcaagcatttcaat |
2304911 |
T |
|
| Q |
319 |
gaagattgtcattcatctttaagtgaagttactcgacgcctatcaatagcaaccaattcca |
379 |
Q |
| |
|
|||| ||||||||||||||||| | || | ||||| |||||||||||||| |||||| |
|
|
| T |
2304910 |
gaagtcaatcattcatctttaagtggaactattagacgcttatcaatagcaacctattcca |
2304850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 825 - 961
Target Start/End: Original strand, 34990789 - 34990925
Alignment:
| Q |
825 |
tggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttccgta |
924 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | |||| ||||||||| ||| | ||| || ||| || | |||| |||||||||||||||| | |
|
|
| T |
34990789 |
tggaatagagttgattaaggagttgggaaagctaaggcggttaaggaagttgagcttgaatgatgtgagggcaagacattcaagcgctttatcttcctca |
34990888 |
T |
|
| Q |
925 |
ttgaatgagctgcgacacttggagaaactacgcattg |
961 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
34990889 |
ctgaatgagatgcgacacttggagaaattacgcattg |
34990925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 825 - 960
Target Start/End: Complemental strand, 2304412 - 2304277
Alignment:
| Q |
825 |
tggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttccgta |
924 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | |||||||||||||| || | ||| ||| ||| || ||||||| || ||||||||||||| |
|
|
| T |
2304412 |
tggaatagagttaattaaagagttgggaaagctaaggcagttaaggaagtttagcttgtttgatgtgaggctagaacattcaatcgctttatcttcctcg |
2304313 |
T |
|
| Q |
925 |
ttgaatgagctgcgacacttggagaaactacgcatt |
960 |
Q |
| |
|
||||||||| ||||||||| ||||||| || ||||| |
|
|
| T |
2304312 |
ttgaatgagatgcgacactcggagaaattatgcatt |
2304277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 821 - 872
Target Start/End: Original strand, 34976909 - 34976960
Alignment:
| Q |
821 |
aggatggaatagagttaattaaggagttgggaaagttgaggcagttaaggaa |
872 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || ||||||||||| |
|
|
| T |
34976909 |
aggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaa |
34976960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 4257565 - 4257671
Alignment:
| Q |
97 |
ttgattcggcaatggatagctgaagggtttgtaaaagaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaa |
196 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||| | ||| ||| || ||||||| ||||||| ||| | ||| || |||||||||||||| |||| |
|
|
| T |
4257565 |
ttgattcggcaatggatagcagaggggtttgttaaacatgaagtgggaaaatctttggaggaagttggagaggaatatttgacagagttgatccacagaa |
4257664 |
T |
|
| Q |
197 |
gtttggt |
203 |
Q |
| |
|
||||||| |
|
|
| T |
4257665 |
gtttggt |
4257671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 730 - 788
Target Start/End: Complemental strand, 2304498 - 2304440
Alignment:
| Q |
730 |
tacaaaatctctttgtttcaattgaagggttgtataggaggcatggaatcgctacaaac |
788 |
Q |
| |
|
||||| |||| ||||||||||||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
2304498 |
tacaatatctgtttgtttcaattgaaggatgttataggaggcatggaatctctacaaac |
2304440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 539 - 583
Target Start/End: Original strand, 34983744 - 34983788
Alignment:
| Q |
539 |
atttgagaagtttgatccacttgaaatatttaagctgcaagaatt |
583 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
34983744 |
attttagaagtctgatccacttgaaatatttaagcttcaagaatt |
34983788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 825 - 961
Target Start/End: Original strand, 34983960 - 34984096
Alignment:
| Q |
825 |
tggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttccgta |
924 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | || ||||||||||| ||| ||| || || || ||||||| ||||||||||||||| | |
|
|
| T |
34983960 |
tggaatagagttaattaaagagttgggaaagctaagacagttaaggaagttgaccttgttttatgcgagggcagaacattttagcgctttatcttcctca |
34984059 |
T |
|
| Q |
925 |
ttgaatgagctgcgacacttggagaaactacgcattg |
961 |
Q |
| |
|
||||||||| |||||||||| || ||| || |||||| |
|
|
| T |
34984060 |
ttgaatgagatgcgacacttagaaaaattatgcattg |
34984096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 742 - 788
Target Start/End: Original strand, 34983886 - 34983932
Alignment:
| Q |
742 |
ttgtttcaattgaagggttgtataggaggcatggaatcgctacaaac |
788 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
34983886 |
ttgtttcaattgaaggatgttataggaggcatggaatctctacaaac |
34983932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 8e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 32 - 386
Target Start/End: Original strand, 40580689 - 40581043
Alignment:
| Q |
32 |
atcttaaatcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaa |
131 |
Q |
| |
|
|||||||||| ||||| || ||||||||| | ||||||||||||||| ||||| | ||||||||| |||||| || |||||||||||||||||||| || |
|
|
| T |
40580689 |
atcttaaatcctgtttgttatattttggaatgtatccagaagattatgaagttaaatcaaagagagtgattctacagtggatagctgaagggtttgtgaa |
40580788 |
T |
|
| Q |
132 |
agaagaaagggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatgga |
231 |
Q |
| |
|
|| ||||| || || ||||||||||||||||| |||| ||| ||||| |||||||| | | | ||||||||||||||||| ||| | ||||| |||||| |
|
|
| T |
40580789 |
ggaggaaagtggaaagactttggaagaagttgctgaagtatatttaactgagttgattcgtcgtagtttggtgcaagtatcctcaattagaattgatgga |
40580888 |
T |
|
| Q |
232 |
aaaacaataagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtgaagattgtcatt |
331 |
Q |
| |
|
||||| | |||||||| ||||| ||| | |||||||||||||| | ||||||||||||||| |||||||||||||| || | | ||||||| |||||| |
|
|
| T |
40580889 |
aaaactaaaagttgttttgttcacgatttgatacgtatgatgatccatgaaaagtgtgaggaattaagtttttgcaagcatttcaatgaagatggtcatt |
40580988 |
T |
|
| Q |
332 |
catctttaagtgaagttactcgacgcctatcaatagcaaccaattccaatgattt |
386 |
Q |
| |
|
|||||||||||| | | | ||||||||||| || |||||||||||| |||||| |
|
|
| T |
40580989 |
catctttaagtggaactcttagacgcctatcagtaacaaccaattccagtgattt |
40581043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 825 - 945
Target Start/End: Original strand, 40581470 - 40581590
Alignment:
| Q |
825 |
tggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttccgta |
924 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| | |||||||||||||| ||| ||| || || || ||||||| ||||||||||||||| | |
|
|
| T |
40581470 |
tggaatagagttaattaaagagttgagaaagctaaggcagttaaggaagttgaacttgttttatgcgagggcagaacattttagcgctttatcttcctca |
40581569 |
T |
|
| Q |
925 |
ttgaatgagctgcgacacttg |
945 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
40581570 |
ttgaatgagatgcgacacttg |
40581590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 51 - 323
Target Start/End: Complemental strand, 872417 - 872144
Alignment:
| Q |
51 |
gtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaagg-gggaatac |
149 |
Q |
| |
|
|||||||||| |||||||| ||| ||| |||||| | |||||| | ||||||| | |||||||||||||||||||| || || |||||| || || || |
|
|
| T |
872417 |
gtattttggaatatatccataaggttagaaagttaaatcaaagtgggtgattcgacggtggatagctgaagggtttgtgaaggaggaaaggaggaaagac |
872318 |
T |
|
| Q |
150 |
tttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaataagttgttgc |
249 |
Q |
| |
|
|| ||||||| ||||||||||||| ||| | ||||| ||||||||| |||||||||||||| ||||| || | ||||| ||| | | | |||| | |
|
|
| T |
872317 |
ttgggaagaatttgcagaaggatatttagccgagtttatccatagattcttggtgcaagtatcatcacttggagttgatggtaaagctaaagtttgtcgt |
872218 |
T |
|
| Q |
250 |
gttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtgaaga |
323 |
Q |
| |
|
|||||||||||| ||| | |||| |||||||| | ||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
872217 |
gttcatgatctactacatgatttgatccttgaaaaatttgaggatttaaatttttgcaagcatattagtgaaga |
872144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 51 - 323
Target Start/End: Complemental strand, 1233694 - 1233421
Alignment:
| Q |
51 |
gtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaagg-gggaatac |
149 |
Q |
| |
|
|||||||||| |||||||| ||| ||| |||||| | |||||| | ||||||| | |||||||||||||||||||| || || |||||| || || || |
|
|
| T |
1233694 |
gtattttggaatatatccataaggttagaaagttaaatcaaagtgggtgattcgacggtggatagctgaagggtttgtgaaggaggaaaggaggaaagac |
1233595 |
T |
|
| Q |
150 |
tttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaataagttgttgc |
249 |
Q |
| |
|
|| ||||||| ||||||||||||| ||| | ||||| ||||||||| |||||||||||||| ||||| || | ||||| ||| | | | |||| | |
|
|
| T |
1233594 |
ttgggaagaatttgcagaaggatatttagccgagtttatccatagattcttggtgcaagtatcatcacttggagttgatggtaaagctaaagtttgtcgt |
1233495 |
T |
|
| Q |
250 |
gttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtgaaga |
323 |
Q |
| |
|
|||||||||||| ||| | |||| |||||||| | ||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
1233494 |
gttcatgatctactacatgatttgatccttgaaaaatttgaggatttaaatttttgcaagcatattagtgaaga |
1233421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University