View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_11 (Length: 502)
Name: NF10080_low_11
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_11 |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 271 - 502
Target Start/End: Complemental strand, 53870442 - 53870210
Alignment:
| Q |
271 |
aactatctgtcagtatcctctatcacc-ccaccgtccactagcttctcacaatagaattttctttcatttgctcttgcaaaattatttcctggagaagtt |
369 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53870442 |
aactatctgtcagtatcctctatcacctccaccgtccaccagcttctcacaatagaattttctttcatttgctcttgcaaaattatttcctggagaagtt |
53870343 |
T |
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| Q |
370 |
gtatnnnnnnnntggtataagttgaatttaaacaatattttcttctcaagattaagttttcaaagtcattggtggtgactgctttgttcgttcattctga |
469 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53870342 |
gtataaaaaaaatggtataagttgaatttaaacaatattttcttctcaagattaagttttcaaagtcattggtggtgactgctttgttcgttcattctga |
53870243 |
T |
|
| Q |
470 |
ttcctttctatcatcttcctatttcacgttttt |
502 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
53870242 |
ttcctttctatcatcttcctatttcacgttttt |
53870210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 53870603 - 53870484
Alignment:
| Q |
102 |
atggtggcatttaacctggaacaatgaaaatttttcccaccatagaaaagtgacttttttcaaggcacgtggcagttgctataggttgtgaaaacaattc |
201 |
Q |
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| T |
53870603 |
atggtggcatttaacctgggacaatgaaattttttcccaccatagaaaagtgacttttttccaggcacgtggc----------ggttgtgaaaacaatta |
53870514 |
T |
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| Q |
202 |
tatttattttaaagcaatttgaaaacaatt |
231 |
Q |
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| T |
53870513 |
tatttattttaaagcaatttgaaaacaatt |
53870484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 271 - 502
Target Start/End: Complemental strand, 40727752 - 40727520
Alignment:
| Q |
271 |
aactatctgtcagtatcctctatcacccc-accgtccactagcttctcacaatagaattttctttcatttgctcttgcaaaattatttcctggagaagtt |
369 |
Q |
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|||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40727752 |
aactatctgtcactatcctctatcacccccaccgtccaccagcttctcacaatagaattttctttcatttgctcttgcaaaattatttcctggagaagtt |
40727653 |
T |
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| Q |
370 |
gtatnnnnnnnntggtataagttgaatttaaacaatattttcttctcaagattaagttttcaaagtcattggtggtgactgctttgttcgttcattctga |
469 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40727652 |
gtataaaaaaaatagtataagttgaatttaaacaatattttcttctcaagattaagttttcaaagtcattggtggtgactgctttgttcgttcattctga |
40727553 |
T |
|
| Q |
470 |
ttcctttctatcatcttcctatttcacgttttt |
502 |
Q |
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||||||||||| |||||| |||||||||||||| |
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| T |
40727552 |
ttcctttctattatcttcttatttcacgttttt |
40727520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 271 - 502
Target Start/End: Complemental strand, 5278217 - 5277985
Alignment:
| Q |
271 |
aactatctgtcagtatcctctatcacc-ccaccgtccactagcttctcacaatagaattttctttcatttgctcttgcaaaattatttcctggagaagtt |
369 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5278217 |
aactatctgtcagtatcctctatcacctccaccgtccaccagcttctcacaatagaattttctttcatttgctcttgcaaaattattttctggagaagtt |
5278118 |
T |
|
| Q |
370 |
gtatnnnnnnnntggtataagttgaatttaaacaatattttcttctcaagattaagttttcaaagtcattggtggtgactgctttgttcgttcattctga |
469 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5278117 |
gtataaaaaaaatgatataagttgaatttaaacaatattttcttctcaagattaagttttcaaagtcattggtggtgactgctttgttcgttcattctga |
5278018 |
T |
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| Q |
470 |
ttcctttctatcatcttcctatttcacgttttt |
502 |
Q |
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||||||||||| ||||| |||||||||||||| |
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| T |
5278017 |
ttcctttctataatcttaatatttcacgttttt |
5277985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 40727917 - 40727790
Alignment:
| Q |
104 |
ggtggcatttaacctggaacaatgaaaatttttcccaccatagaaaagtgacttttttcaaggcacgtggcagttgctataggttgtgaaaacaattcta |
203 |
Q |
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|||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
40727917 |
ggtggcatttaatctgggacaatgaaattttttcccaccatagaaaagtgacttttttccaggcacgtggcagttgctacaggttgtgaaaacaattcta |
40727818 |
T |
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| Q |
204 |
tttattttaaagcaatttgaaaacaatt |
231 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
40727817 |
tttattttaaagcaatttgaaaacaatt |
40727790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 5278372 - 5278255
Alignment:
| Q |
104 |
ggtggcatttaacctggaacaatgaaaatttttcccaccatagaaaagtgacttttttcaaggcacgtggcagttgctataggttgtgaaaacaattcta |
203 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
5278372 |
ggtggcatttaacctgggacaatgaaattttttcccaccataaaaaagtgacttttttccaggcacgtggca----------gttgtgaaaacaattcta |
5278283 |
T |
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| Q |
204 |
tttattttaaagcaatttgaaaacaatt |
231 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
5278282 |
tttattttaaagcaatttgaaaacaatt |
5278255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 8e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 302 - 502
Target Start/End: Original strand, 624729 - 624929
Alignment:
| Q |
302 |
cgtccactagcttctcacaatagaattttctttcatttgctcttgcaaaattatttcctggagaagttgtatnnnnnnnntggtataagttgaatttaaa |
401 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
624729 |
cgtccaccagcttctcacaatagaattttctttcatttgctcttgcaaaattatttcctggagaagttgtataaaaaaaatggtataagttgaatttaaa |
624828 |
T |
|
| Q |
402 |
caatattttcttctcaagattaagttttcaaagtcattggtggtgactgctttgttcgttcattctgattcctttctatcatcttcctatttcacgtttt |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
624829 |
caatattttcttctcaagattaagttttcaaagtcattggtggtgactgctttgttcgttcattctgattcctttctatcatcttcctatttcacgtttt |
624928 |
T |
|
| Q |
502 |
t |
502 |
Q |
| |
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| |
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| T |
624929 |
t |
624929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 624425 - 624477
Alignment:
| Q |
104 |
ggtggcatttaacctggaacaatgaaaatttttcccaccatagaaaagtgact |
156 |
Q |
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| T |
624425 |
ggtggcatttaaaatgggacaatgaaattttttcccaccatagaaaagtgact |
624477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 624642 - 624671
Alignment:
| Q |
202 |
tatttattttaaagcaatttgaaaacaatt |
231 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
624642 |
tatttattttaaagcaatttgaaaacaatt |
624671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 765501 - 765462
Alignment:
| Q |
15 |
aacaaaattaaattcgtccccacattgtttttacctttat |
54 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |
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| T |
765501 |
aacaaaattaaattcgtccccacattgtttttccctttat |
765462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 51976204 - 51976109
Alignment:
| Q |
134 |
tttcccaccatagaaaagtgac-ttttttcaaggcacgtggcagttgctataggttgtgaaaacaattctatttattttaaagcaatttgaaaaca |
228 |
Q |
| |
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||||||||||||| |||||| | ||||||| ||||| |||||||||||| | |||||||||||||| | |||||||||||| ||| ||||||| |
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| T |
51976204 |
tttcccaccataggaaagtgccattttttccaggcaggtggcagttgctgcaatttgtgaaaacaattgtttttattttaaagtaataagaaaaca |
51976109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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