View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10080_low_13 (Length: 479)
Name: NF10080_low_13
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 17880858 - 17881319
Alignment:
| Q |
1 |
cacaggtttggacagggcatgttgtaactgcacatacgaaccagcctctagtgcaatgggcctatcggaaacttatccttataataacagaaacaaaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17880858 |
cacaggtttggacagggcatgttgtaactgcacatacgaaccagcctctagtgcaatgggcctatcggaaacttatccttataataacagaaaaaaaggt |
17880957 |
T |
|
| Q |
101 |
aatccataacttctatgatatgctagtataataaactttaatatcagtggtcacctgtcgtaaacaaaaaccgcaatgtcacatgaggccaaaggatcct |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
17880958 |
aatccataacttctatgatatgccagtataataaactttaatatcagtggtcacctgtcgtaaacaaaaaccgcaatgtcacatgaggccaaagactcct |
17881057 |
T |
|
| Q |
201 |
tattggctagcagctttgtgactccaccttcagaaatctctctcagcacaagatattttttgttttcctacaaacaaaatgattaaccgtgaattggaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17881058 |
tattggctagcagctttgtgactccaccttcagaaatctctctcagcacaagatattttttgttttcctacaaacaaaatgattaaccgtgaattggaag |
17881157 |
T |
|
| Q |
301 |
atgtaattccaatatatacaaaatgaatacatcaaatgaagactttggtgcaggaaaaggcgaaagaaatgaaatgtctttctctgtcacagttataagc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17881158 |
atgtaattccaatatatacaaaatgaatacatcaaatgaagactttggtgcaggaaaaggcgaaagaaatgaaatgtctttctctgtcacagttataagc |
17881257 |
T |
|
| Q |
401 |
tattgtcaaactcaatcgaatatcatttaccatagaaatatcaacaacatttacagcatagc |
462 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17881258 |
tattgtcaaactcaatcgagtatcatttaccatagaaatatcaacaacatttacagcatagc |
17881319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 15048107 - 15048550
Alignment:
| Q |
16 |
ggcatgttgtaactgcacatacgaaccagcctctagtgcaatgggcctatcggaaacttatccttataataacagaaacaaaggtaatccataacttcta |
115 |
Q |
| |
|
|||||| ||||||| || || ||||||||||||| ||| ||||| |||| |||||||||||||||||| ||| || ||||||||||||||||||| | |
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|
| T |
15048107 |
ggcatgctgtaacttcatatgcgaaccagcctcttttgccatgggtttatcaaaaacttatccttataata-cagtaaaaaaggtaatccataacttc-a |
15048204 |
T |
|
| Q |
116 |
tgatatgctagtataat-aaactttaatatcagtggtcacctgtcgtaaacaaaaaccgcaatgtcacatgaggccaaaggatccttattggctagcagc |
214 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| | |||||||||||||||| |
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|
| T |
15048205 |
tcatatgctagtataatgaaactttaatatcagtggtcacctgtcataaacaaaaattgcaatgtcacatgaggccaaagacttcttattggctagcagc |
15048304 |
T |
|
| Q |
215 |
tttgtgactccaccttcagaaatctctctcagcacaagatattttttgttttcctacaaacaaaatgattaaccgtgaattggaagatgt-aattccaat |
313 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |||| |
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|
| T |
15048305 |
tttgtgactcctccttcagaaatctctctcagcacaagatattttttgttttcctacaaacaaaatgattaaccgtgaactggaagatataaatgccaag |
15048404 |
T |
|
| Q |
314 |
atataca---aaatgaatacatcaaatgaagactttggtgcaggaaaaggcgaaagaaatgaaatgtctttctctgtcacagttataagctattgtc-aa |
409 |
Q |
| |
|
||||| | |||||||||||||||||||||||||| |||| |||||||||||||||| |||||| |||| ||||||||||||| ||||||||||| || |
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| T |
15048405 |
atatatatacaaatgaatacatcaaatgaagacttt-gtgccggaaaaggcgaaagaagtgaaatatctt--tctgtcacagttagaagctattgtcgaa |
15048501 |
T |
|
| Q |
410 |
actcaatcgaatatcatttaccatagaaatatcaacaacatttacagca |
458 |
Q |
| |
|
| |||| | | ||||||||||| |||||||||| || | |||||||||| |
|
|
| T |
15048502 |
aatcaaccaagtatcatttaccctagaaatatcgacgatatttacagca |
15048550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 95 - 391
Target Start/End: Original strand, 14773686 - 14773980
Alignment:
| Q |
95 |
aaaggtaatccataacttctatgatatgctagtataataaactttaatatcagtggtcacctgtcgtaaacaaaaaccgcaatgtcacatgaggccaaag |
194 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||| || ||||||||||| |||||||||||||| | ||||||||| ||| |||||||||||||||||| |
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|
| T |
14773686 |
aaaggtaatccatagtttctatcatatgctggtattatgaactttaatataagtggtcacctgtcatgaacaaaaactgca-tgtcacatgaggccaaag |
14773784 |
T |
|
| Q |
195 |
gatccttattggctagcagctttgtgactccaccttcagaaatctctctcagcacaagatattttttgttttcctacaaacaaaatgattaaccgtgaat |
294 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| || | ||||| |
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|
| T |
14773785 |
actccttgttggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttgttttcctacaaataaaacgatgaatcatgaat |
14773884 |
T |
|
| Q |
295 |
tggaagatgtaattccaatatatacaaaatgaatacatcaaatgaagactttggtgcaggaaaaggcgaaagaaatgaaatgtctttctctgtcaca |
391 |
Q |
| |
|
||||||| ||| | | | | | ||||||||||||||| ||| |||||||||||| ||||||| ||||||||||||||||||||| |||||||| |
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|
| T |
14773885 |
tggaagaaataaatgcca-aaacacaaaatgaatacatggaattaagactttggtgtgagaaaaggtgaaagaaatgaaatgtctttcactgtcaca |
14773980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 68 - 350
Target Start/End: Original strand, 15015426 - 15015704
Alignment:
| Q |
68 |
gaaacttatccttataataacagaaacaaaggtaatccataacttctatgatatgctagtataataaactttaatatcagtggtcacctgtcgtaaacaa |
167 |
Q |
| |
|
||||| ||| |||||||||||| || ||| ||||||||||| |||||| ||||||| ||| || |||| ||||| |||||||||| | ||||| |
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|
| T |
15015426 |
gaaacctatgcttataataacatgaaaaaatgtaatccataatttctatcatatgctgatattatgtacttcaatat-----gtcacctgtcatgaacaa |
15015520 |
T |
|
| Q |
168 |
aaaccgcaatgtcacatgaggccaaaggatccttattggctagcagctttgtgactccaccttcagaaatctctctcagcacaagatattttttgttttc |
267 |
Q |
| |
|
|||| ||||||||||||||| ||| || ||||| || |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
15015521 |
aaactgcaatgtcacatgagcccagagactccttgtttgctagcagctttgtaactccaccttcagaaatctctctcagcacaatatattttttgttttc |
15015620 |
T |
|
| Q |
268 |
ctacaaacaaaatgattaaccgtgaattggaagatgtaa-ttccaatatatacaaaatgaatacatcaaatgaagactttggtg |
350 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||| ||| | |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15015621 |
ctacaaacaaaatggtaaacaatgaattggaagatataagtatcaatatgtacaaaatgaatacatcaaatgaagactttggtg |
15015704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 451
Target Start/End: Original strand, 15016008 - 15016089
Alignment:
| Q |
371 |
gaaatgtctttctctgtcacagttataagctattgtcaaac-tcaatcgaatatcatttaccatagaaatatcaacaacatt |
451 |
Q |
| |
|
||||||||||||| || |||||| | |||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||| |
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|
| T |
15016008 |
gaaatgtctttctttgacacagtaagaagctattgtcaaatgtcaatcgagtatcaattaccgtagaaatatcaacaacatt |
15016089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 14773989 - 14774028
Alignment:
| Q |
421 |
tatcatttaccatagaaatatcaacaacatttacagcata |
460 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
14773989 |
tatcaattaccctagaaatatcaacaacatttacagcata |
14774028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 283
Target Start/End: Original strand, 54158955 - 54159087
Alignment:
| Q |
151 |
tcacctgtcgtaaacaaaaaccgcaatgtcacatgaggccaaaggatccttattggctagcagctttgtgactccaccttcagaaatctctctcagcaca |
250 |
Q |
| |
|
||||||||| | ||||| || ||||||||||| |||||||||| |||||||| || |||||| | | |||||| |||||| |||||||||||||||| |
|
|
| T |
54158955 |
tcacctgtcatgaacaataattgcaatgtcacaagaggccaaagactccttattcgccagcagccctttaactccatcttcaggaatctctctcagcaca |
54159054 |
T |
|
| Q |
251 |
agatattttttgttttcctacaaacaaaatgat |
283 |
Q |
| |
|
|||||||| || ||| ||| ||||||||||||| |
|
|
| T |
54159055 |
agatatttcttctttccctgcaaacaaaatgat |
54159087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 151 - 283
Target Start/End: Complemental strand, 53868355 - 53868223
Alignment:
| Q |
151 |
tcacctgtcgtaaacaaaaaccgcaatgtcacatgaggccaaaggatccttattggctagcagctttgtgactccaccttcagaaatctctctcagcaca |
250 |
Q |
| |
|
||||||||| | ||| ||||| |||| |||||| |||||||||| | ||||| || ||||||| | | |||||| |||||| ||| |||||||||||| |
|
|
| T |
53868355 |
tcacctgtcatgaacgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcaca |
53868256 |
T |
|
| Q |
251 |
agatattttttgttttcctacaaacaaaatgat |
283 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||| |
|
|
| T |
53868255 |
agatatttcttgtttccctgcaaacaaaatgat |
53868223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 51365879 - 51365982
Alignment:
| Q |
163 |
aacaaaaaccgcaatgtcacatgaggccaaaggatccttattggctagcagct-ttgtgactccaccttcagaaatctctctcagcacaagatatttttt |
261 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||||||| || ||||| | | |||||||| ||||| ||||||| ||| |||||||||||| || |
|
|
| T |
51365879 |
aacaaaaatggcaatgtcacaagaggccaaagactccttattagccagcagttctcttgactccatcttcatgaatctctttcaacacaagatatttctt |
51365978 |
T |
|
| Q |
262 |
gttt |
265 |
Q |
| |
|
|||| |
|
|
| T |
51365979 |
gttt |
51365982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 51366131 - 51366170
Alignment:
| Q |
421 |
tatcatttaccatagaaatatcaacaacatttacagcata |
460 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
51366131 |
tatcatttaccatagcaaaatcaacaacatttacagcata |
51366170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Complemental strand, 53868141 - 53868102
Alignment:
| Q |
421 |
tatcatttaccatagaaatatcaacaacatttacagcata |
460 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
53868141 |
tatcatttaccatagaattatcaacaacatttacaacata |
53868102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 279
Target Start/End: Complemental strand, 36876604 - 36876462
Alignment:
| Q |
137 |
tttaatatcagtggtcacctgtcgtaaacaaaaaccgcaatgtcacatgaggccaaaggatccttattggctagcagctttgtgactccaccttcagaaa |
236 |
Q |
| |
|
|||||||||| ||||||||||| | |||||||| |||||||||||||||||||||| ||||| | ||| | ||| ||| ||| ||||||| | || |
|
|
| T |
36876604 |
tttaatatcaacggtcacctgtcatggacaaaaactgcaatgtcacatgaggccaaagactccttgtcggccaccagtcttgcaacttcaccttctggaa |
36876505 |
T |
|
| Q |
237 |
tctctctcagcacaagatattttttgttttcctacaaacaaaa |
279 |
Q |
| |
|
||||| ||| ||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
36876504 |
tctctttcaacacgagatattttctgttttcctgcaaacaaaa |
36876462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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