View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_16 (Length: 453)
Name: NF10080_low_16
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 23 - 437
Target Start/End: Complemental strand, 8647564 - 8647152
Alignment:
| Q |
23 |
agaatagttggaaactagtttttctccatcactacttctgaaactcgtgctgaaaatcaaagtggaatcggtggttatttatgttgttgcttggcaggtg |
122 |
Q |
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| T |
8647564 |
agaatagttggaaactagtttttctccatcactacttctgaaactcgtgctgaaaatcaaagtggaatcggtggttatttatgttgttgcttggcaggtg |
8647465 |
T |
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| Q |
123 |
ttttcaaaatatgtgaataagtggattgccttggcttgcccttttcaaggtaattccttttcctctgtttttacgtgcttccttttctttggtgttaatt |
222 |
Q |
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| T |
8647464 |
ttttcaaaatatgtgaataagtggattgccttggcttgcccttttcaaggtaattccttttcct--gtttttacgtgcttccttttctttggtgttaatt |
8647367 |
T |
|
| Q |
223 |
tatctaatttatttagtacatagtcaattttattggtccatgattcgaagtttaaaaacatttggatatgaacatacccttctggatagccatatgatta |
322 |
Q |
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| T |
8647366 |
tatctaatttatttagtacatagtcaattttattggtccatgattcgaagtttaaaaacatttggatatgaacatacccttctggatagccatatgatta |
8647267 |
T |
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| Q |
323 |
ttaaattaaatgtgaatttcataagatgaattggaaactattcttaatggtacttaattttttataagtatgccattctatgactagttatctttatctt |
422 |
Q |
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| T |
8647266 |
ttaaattaaatgtgaatttcatgagatgaattggaaactattcttaatggtacttaattttttataagtatgccattctatgactagttatctttatctt |
8647167 |
T |
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| Q |
423 |
ccattcttatctgtg |
437 |
Q |
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| T |
8647166 |
ccattcttatttgtg |
8647152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 73 - 432
Target Start/End: Original strand, 30607061 - 30607409
Alignment:
| Q |
73 |
tgaaaatcaaagtggaatcggtggttatttatgttgttgcttggcaggtgttttcaaaatatgtgaataagtggattgccttggcttgcccttttcaagg |
172 |
Q |
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| T |
30607061 |
tgaaaatcaaagtggaatcggtggttatttatgttgttgcttggcaggtgttttcaaaatacgtgaataagtggattgccttggcttgcccttttcaagg |
30607160 |
T |
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| Q |
173 |
taattccttttcctctgtttttacgtgcttccttttctttggtgttaatttatctaatttatttagtacatagtcaattttattggtccatgattcgaag |
272 |
Q |
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| T |
30607161 |
taattccttttcttctgtttttacgtgcttccttttctttggtgt----------aatttgtttagtacatagtcaattttattggtccatgactcgaag |
30607250 |
T |
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| Q |
273 |
tttaaaaacatttggatatgaacatacccttctggatagccatatgattattaaattaaatgtgaatttcataagatgaattggaaactattcttaatgg |
372 |
Q |
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||||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
30607251 |
tttaaaaacatttggatatgaacat-ccctttttgatagccatttgattattaaattaaatgtgaatttcatgagatgaattggaaaatattattaatgg |
30607349 |
T |
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| Q |
373 |
tacttaattttttataagtatgccattctatgactagttatctttatcttccattcttat |
432 |
Q |
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||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30607350 |
tacttaattattgataagtatgtcattctatgactagttatctttatcttccattcttat |
30607409 |
T |
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