View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_18 (Length: 435)
Name: NF10080_low_18
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 14437920 - 14437503
Alignment:
| Q |
19 |
aacacaatataccagtaacatacacatctttaggaaaaacttaaaaaatacccagaaaccactttggata--gcggttttggcttgaaatactaactaaa |
116 |
Q |
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| T |
14437920 |
aacacaatataccaataacatacacatctttaggaaaaacttaaaaaatacacagaaaccactttggatatagcggttttggcttgaaatactaactaaa |
14437821 |
T |
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| Q |
117 |
cttattgcaaacccttaatgacttttcttacctataacttaaatgtaaaattatttttataaacatccataaatgtatgatctaaaagtctcataagaag |
216 |
Q |
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| T |
14437820 |
cttattgcaaatccttaatgacttttcttacctataacttaaatgtaaaattatttttataaacatccataaatgtatgatctaaaagtctcataagaag |
14437721 |
T |
|
| Q |
217 |
gcaaccaaataaggctcctgtatatgacaaacacgtatagaataagaaaa---------attaaatatcattttcggaaaacaaacaaataaggctggcc |
307 |
Q |
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| T |
14437720 |
gcaaccaaataaggctcctgtatatgacaaacacgtatagaataagaaaaattcaatatattaaatatcattttcggaaaacaaacaaataaggctggcc |
14437621 |
T |
|
| Q |
308 |
aatccatatttataagttagtagtctagaggtactatattttttctgttacccttattttcataactttactttattaatcatatcattcaatttctaac |
407 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14437620 |
aatccatatttataagttagcagtctagaagtactatattttttctgttacccttattttcataactttactttattaatcatatcattcaatttctaac |
14437521 |
T |
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| Q |
408 |
atctttcaccgtcctttg |
425 |
Q |
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|||||||||||||||||| |
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| T |
14437520 |
atctttcaccgtcctttg |
14437503 |
T |
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