View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_21 (Length: 409)
Name: NF10080_low_21
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 223 - 402
Target Start/End: Complemental strand, 14353883 - 14353704
Alignment:
| Q |
223 |
caagtacctttatagacccctccttaatcttttcaacggttccaacatcaataactgcagactttcctgtcacattcttaagattgaaaggtcctaattt |
322 |
Q |
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| T |
14353883 |
caagtacctttatagacccctccttaatcttttcaacggttccaacatcaataactgcagactttcctgtcacattcttaagattgaaaggtcccaattt |
14353784 |
T |
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| Q |
323 |
gggacgataaatcccatacttagacaaatcaccatattttagttttgcccatagagtaatgatagtatccacaacaccaa |
402 |
Q |
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| T |
14353783 |
aggacgataaatcccatacttagacaaatcaccatattttagttttgcccatagagtaatgatagtatccacaacaccaa |
14353704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 14354087 - 14353943
Alignment:
| Q |
19 |
cttaagccacccattagctatgcttttgtagccagttgcaaaaacgatcgcatcaaactctttttccatgttgttttcaaatacaactttctttttctca |
118 |
Q |
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| T |
14354087 |
cttaagccacccattagctatgcttttgtagccagttgcaaaaacgatcgcatcaaactctttttccatgttgttttcaaatacaactttctttttctca |
14353988 |
T |
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| Q |
119 |
attctcataatatatgaagaaacaacctgtagttttgaacagatt |
163 |
Q |
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| T |
14353987 |
attctcgtaatatatgaagaaacaacctgtaattttgaacagatt |
14353943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 225 - 398
Target Start/End: Original strand, 43884004 - 43884176
Alignment:
| Q |
225 |
agtacctttatagacccctccttaatcttttcaacggttccaacatcaataactgcagactttcctgtcacattcttaagattgaaaggtcctaatttgg |
324 |
Q |
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| T |
43884004 |
agtacctttatagatccctaattaatcttttcgatggttccaaaatcaataactgcagattttcctatcacgttcttgagttgtaaaggtcccaatttgg |
43884103 |
T |
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| Q |
325 |
gacgataaatcccatacttagacaaatcaccatattttagttttgcccatagagtaatgatagtatccacaaca |
398 |
Q |
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| T |
43884104 |
gacgataaatctcatacttggacaaatcaccatattttagttttgccga-aaagtaatgatagcatccacaaca |
43884176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 43883497 - 43883629
Alignment:
| Q |
20 |
ttaagccacccattagctatgcttttgtagccagttgcaaaaacgatcgcatcaaactctttttccatgttgttttcaaa---tacaactttctttttct |
116 |
Q |
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| T |
43883497 |
ttaagccacccattagctatgcttttgtagccagtcgcgaaaacgattacatcaaactctttttccatgttgtttccaaatagtacaactttctttttct |
43883596 |
T |
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| Q |
117 |
caattctcat-aatatatgaagaaacaacctgt |
148 |
Q |
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| T |
43883597 |
caattctcgtaaatatctgaaggaacaacctgt |
43883629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 227 - 396
Target Start/End: Complemental strand, 12381060 - 12380891
Alignment:
| Q |
227 |
tacctttatagacccctccttaatcttttcaacggttccaacatcaataactgcagactttcctgtcacattcttaagattgaaaggtcctaatttggga |
326 |
Q |
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||||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||||||| | ||| || |||| |||||||| ||||||| |
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| T |
12381060 |
tacctttatagcaccctccttaatctttccaatggttccaacatcaataacggcagactttcctgtaatatttttgagatgtaaaggtccctctttggga |
12380961 |
T |
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| Q |
327 |
cgataaatcccatacttagacaaatcaccatattttagttttgcccatagagtaatgatagtatccacaa |
396 |
Q |
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| T |
12380960 |
cgataaattccatatttagacagatcaccatattttagttttgccaaaagagtaatgtatgtatccacaa |
12380891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 12381421 - 12381297
Alignment:
| Q |
23 |
agccacccattagctatgcttttgtagccagttgcaaaaacgatcgcatcaaactctttttccatgttgttttcaaatacaactttctttttctcaattc |
122 |
Q |
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||||| ||||||||||| ||||| ||||| || |||||||| || |||||||||||| |||| | ||||||||||| |||| |||||| |||||||||| |
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| T |
12381421 |
agccatccattagctatacttttatagccggtagcaaaaacaattgcatcaaactctctttctacattgttttcaaagacaattttcttcttctcaattc |
12381322 |
T |
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| Q |
123 |
tcataatatatgaagaaacaacctg |
147 |
Q |
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| T |
12381321 |
tggttatatttgaaggaacaacctg |
12381297 |
T |
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