View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10080_low_22 (Length: 408)
Name: NF10080_low_22
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 27312817 - 27312441
Alignment:
| Q |
18 |
attctcgtaaaacttacacaactttttgcacgcttaagcgtcgtcgtgttcatcatcatctgctttcgaactttatcgggtaatctcaatgtaaacctct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
27312817 |
attctcgtaaaacttacacaactttttgcacgcttaagtgtcgtcgtgttcaacatcatctgctttcgaactttatcgggtaacctcagtgtaaacctct |
27312718 |
T |
|
| Q |
118 |
cacaatcctcacctggttgcaccaacacacctgttgagtttgaccgtgataacaagagaatagataagaatcctgttgatcttgaccgtgttggtgcaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27312717 |
cacaatcctcacctggttgcaccaacacacctgttgagtttgaccgtgataacaagagaatagataagaatcctgttgatcttgaccgtgttggtgcaga |
27312618 |
T |
|
| Q |
218 |
atatgttttagacctatgaagtacatctaccttaggtgaattttccacttccacgttggctttcttttgttcctcttcaacaatatgttctacttcttca |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27312617 |
atatgttttagacctacgaagtacatctaccttaggtgaattttccacttccacgttggctttcttttgttcctcttcaacaatatgttctacttcttca |
27312518 |
T |
|
| Q |
318 |
tcatttgaaatttgtatactcaattcttgacgattatcttctccttctggtatctgattcgatatcattgtaggctc |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27312517 |
tcatttgaaatttgtatactcaattcttgacgattatcttctccttctggtatctgattcgatatcattgtaggctc |
27312441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University