View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_26 (Length: 382)
Name: NF10080_low_26
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 38875237 - 38875573
Alignment:
| Q |
1 |
ttgccatgcctaactaagattaggctcctctataatgcctaaccattcttctttgcatagtagcaagaagaatttgttggattggccaactagacttaaa |
100 |
Q |
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| T |
38875237 |
ttgccatgcctaactaagattaggctcctctataatgcctaaccattcttctttgcatagtagcaagaagaatttgttggattggctaactagacttaaa |
38875336 |
T |
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| Q |
101 |
attgttgttgatgctgctgggggactttcttatttgcattatgatagtgttgtttctattgttcatagggatgtaaaatctagcaaaataggaatgtaat |
200 |
Q |
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| T |
38875337 |
attgttgtagatgctgctgggggactttcttatttgcattatgatagtgttgttcttattgttcatagggatgtaaaatctagcaaaataggaatgtaat |
38875436 |
T |
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| Q |
201 |
caaatgtgtcggtgtcttgacgatgtatgtcaccaacacatgtcggacacaacttcaatgtgaagaattggtgctacatagtatatcattattaaactat |
300 |
Q |
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| T |
38875437 |
caaatgtgtcggtgtcttgacgatatatgtcaccaacacatgtcggacacaacttcaatgtgaagaattgatgctacatagtatatcattattaaactat |
38875536 |
T |
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| Q |
301 |
ataatatttacttatcattcttaaactatgatcatga |
337 |
Q |
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| T |
38875537 |
ataatatttacttatcattcttaaactatgatcatga |
38875573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 5 - 337
Target Start/End: Original strand, 38872077 - 38872417
Alignment:
| Q |
5 |
catgcctaactaagattaggctcctctataatgcctaaccattcttctttgcatagtagcaagaagaatttgttggattggccaactagacttaaaattg |
104 |
Q |
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| T |
38872077 |
catgccgaactaagattaggctccgttataatgcccaaccattcttcagtgcatagtaacaagaagaatttgttggattgac-aactagacttaaaattg |
38872175 |
T |
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| Q |
105 |
ttgttgatgctgctgggggactttcttatttgcattatgatagtgttgtttctattgttcatag--------------ggatgtaaaatctagcaaaata |
190 |
Q |
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| T |
38872176 |
ctgttgatgctgttgagggactttcttatttgcatcatgattgtgttgttcctattgttcatagcctatgaatcatagggatgtagaatctagcaaaata |
38872275 |
T |
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| Q |
191 |
ggaatgtaatcaaatgtgtcggtgtcttgacgatgtatgtcaccaacacatgtcggacacaacttcaatgtgaagaattggtgctacatagtatatcatt |
290 |
Q |
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| T |
38872276 |
gagatgtaatcaaatatgtcg-tgtcttgatgatgtatgtcaccaacacatgtcggacacaacatcaatgtgaagaaatgatgcaacatagtatatcatt |
38872374 |
T |
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| Q |
291 |
attaaactatataatatttacttatcattcttaaactatgatcatga |
337 |
Q |
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| T |
38872375 |
attaaactatataatatttactta----tcttaaactatgatcatga |
38872417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 53 - 183
Target Start/End: Original strand, 38868215 - 38868345
Alignment:
| Q |
53 |
ttgcatagtagcaagaagaatttgttggattggccaactagacttaaaattgttgttgatgctgctgggggactttcttatttgcattatgatagtgttg |
152 |
Q |
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| T |
38868215 |
ttgcatagtagcaagaagaatttgttggattggccaacaagacttaaaattgctgttgatgctgctgagggactttcttatttgcaccatgattgtgttg |
38868314 |
T |
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| Q |
153 |
tttctattgttcatagggatgtaaaatctag |
183 |
Q |
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|| |||||||||||||||||||||||||||| |
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| T |
38868315 |
ttcctattgttcatagggatgtaaaatctag |
38868345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 38869168 - 38869219
Alignment:
| Q |
278 |
atagtatatcattattaaactatataatatttacttatcattcttaaactat |
329 |
Q |
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| T |
38869168 |
atagtctatcatcattaaactatattatatttacttaacattcttaaactat |
38869219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 38778221 - 38778189
Alignment:
| Q |
5 |
catgcctaactaagattaggctcctctataatg |
37 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
38778221 |
catgcctaactaagattaggctcctctataatg |
38778189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 38782559 - 38782527
Alignment:
| Q |
5 |
catgcctaactaagattaggctcctctataatg |
37 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
38782559 |
catgcctaactaagattaggctccgctataatg |
38782527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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