View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10080_low_27 (Length: 369)
Name: NF10080_low_27
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 53091690 - 53091338
Alignment:
| Q |
18 |
gaacctgaacgggtgatgaccttttaaagagaagaccaataatatggatatactttttaaaggaaaaaataataaaaatgttatataagtgataagtcat |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
53091690 |
gaacctgaacgggtgatggccttttaaagagaagaccaataatatggatatactttttaaaggaaaaaataataaaaaggtcatataagtgataagtcat |
53091591 |
T |
|
| Q |
118 |
aagttatttattatattttagcaatgaaaactattcaatagagaatactccagttccttc----nnnnnnnnntagagaatactccagtattatttgtgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
53091590 |
aagttatttattatattttagcaatgaaaactattcaatagagaatactccagttccttcaaaaaaaaaaaaatagagaatactccagtattatttgtgt |
53091491 |
T |
|
| Q |
214 |
aaacaaagatattctggcacgcaaatgtgagtgagcatatattattatatagtaattatatgagatttgtcaaccnnnnnnnntaattatatgagattac |
313 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
53091490 |
aaacaaacatattctggcacgcaaatgtgagtgagcatatattattatatagtaattatatgagatttgtcaaccaaaaataataattatatgagattac |
53091391 |
T |
|
| Q |
314 |
taatttaaaatgttgatatcttctactagatgtttctcactctctgcttctcc |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53091390 |
taatttaaaatgttgatatcttctactagatgtttctcactctctgcctctcc |
53091338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University