View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_28 (Length: 361)
Name: NF10080_low_28
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 4782923 - 4782593
Alignment:
| Q |
1 |
tgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagtttgccatatttgtgtgtaaagcttgttgttgttagagaagaa |
100 |
Q |
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| T |
4782923 |
tgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagtttgccatatttgtgtgtaaagcttgttgttgttagagaagaa |
4782824 |
T |
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| Q |
101 |
tgtgaagagtagannnnnnnnncttcttgtgatgacttttgagacactacagattgcatgtatttattgttatattcattgagaagcaggaaggaaattt |
200 |
Q |
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| T |
4782823 |
tgtgaagagtagatttttttttcttcttgtgatgacttttgagacactacagattgcatgtatttattgttatattcattgagaagcaggaaggaaattt |
4782724 |
T |
|
| Q |
201 |
ctacgaaaccacactagagactattcatggaatcaactactttgaaatgtcaaaggatcactatgggaatcctttaggatcacataattatggttgtgga |
300 |
Q |
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| T |
4782723 |
ctacgaaaccacactagagactattcatggaatcaactactttgaaatgtcaaaggatcactatgggaatcctttaggatcacataattatggttgtgga |
4782624 |
T |
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| Q |
301 |
taggaaaccactctttttcctaattcaaaag |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
4782623 |
taggaaaccactctttttcctaattcaaaag |
4782593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 4815352 - 4815019
Alignment:
| Q |
1 |
tgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagtttgccatatttgtgtgtaaagcttgttgttgttagagaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4815352 |
tgaaggaaaaggaagtgtagaagggtggtgttacattgaaatttgtggtttctggagtttgccatatttgtgtgtaaagcttgttgttgttagagaagaa |
4815253 |
T |
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| Q |
101 |
tgtgaagagtagannnnnnnnncttcttgtgatgacttttgagacactacagattgcatgtatttattgttatattcattgagaagcaggaaggaaattt |
200 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
4815252 |
tgtgaagagtagatttatttttcttcctgtgatgacttttgagacactacaaattgcatgtatttattgttattttcattgagaggcaggaaggaaattt |
4815153 |
T |
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| Q |
201 |
ctacgaaaccacactagagactattcatggaatcaactactttgaaat-gtcaaaggatcactatgggaatc--ctttaggatcacataattatggttgt |
297 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| ||||||| |
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| T |
4815152 |
ctacgaaaccacactagagactactcatggaatcaactactttgaaatggtcaaaggatcactatgagaatccgctttaggatcacataattgtggttgt |
4815053 |
T |
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| Q |
298 |
ggataggaaaccactctttttcctaattcaaaag |
331 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
4815052 |
ggataggaagccactctttttcctaattcaaaag |
4815019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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