View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_29 (Length: 349)
Name: NF10080_low_29
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 42805535 - 42805852
Alignment:
| Q |
18 |
atattaaattcatagaagaaattagaaagaagatatagatagtgatcgcgaacttgtgtctgtcttcatctcatgatattatatattagtttgaaaattt |
117 |
Q |
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| T |
42805535 |
atattaaattcatagaagaaattagaaagaagatatagatagtgatcgcgaacttgtgtctgtcttcatctcatgatattatatatcagtttgaaaattt |
42805634 |
T |
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| Q |
118 |
agttagatgtgaaaatgacactggtctattcctctattgtagatgaaggaagatcacatgactgcttcatttggggccttctccgataccaagtacgttc |
217 |
Q |
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| T |
42805635 |
agttagatgtgaaaatgacactggtctattcctctattgtagatgaaggaagatcacatgactgcttcatttggggccttctccgataccaagtacgttc |
42805734 |
T |
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| Q |
218 |
gttttctgtgttggaagtctagaaaatcaatgagtacgtgcaatatgcca-nnnnnnnncttcataattgttagtaacagctaagggtgtcagcttaaaa |
316 |
Q |
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| T |
42805735 |
gttttctgtgttggaagtctagaaaatcaatgagtacgtgcaatatgccatttttttttcttcataattgttagtaacagctaagggtgtcagcttaaaa |
42805834 |
T |
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| Q |
317 |
gtgaagggccaagatcat |
334 |
Q |
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| T |
42805835 |
gtgaagggccaagatcat |
42805852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 42792399 - 42792285
Alignment:
| Q |
150 |
tctattgtagatgaaggaagatcacatgactgcttcatttggggccttctccgataccaagtacgttcgttttctgtgttggaagtctagaaaatcaatg |
249 |
Q |
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| T |
42792399 |
tctattgtagatgaaggaagtttacgagactgcttcatttggggtcttctccgacacacagtacgttcgttatctatgttgaaagtatagaaaatcaacg |
42792300 |
T |
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| Q |
250 |
agtacgtgcaatatg |
264 |
Q |
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| T |
42792299 |
agtacgtgcaatatg |
42792285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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