View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10080_low_29 (Length: 349)

Name: NF10080_low_29
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10080_low_29
NF10080_low_29
[»] chr8 (2 HSPs)
chr8 (18-334)||(42805535-42805852)
chr8 (150-264)||(42792285-42792399)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 42805535 - 42805852
Alignment:
18 atattaaattcatagaagaaattagaaagaagatatagatagtgatcgcgaacttgtgtctgtcttcatctcatgatattatatattagtttgaaaattt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
42805535 atattaaattcatagaagaaattagaaagaagatatagatagtgatcgcgaacttgtgtctgtcttcatctcatgatattatatatcagtttgaaaattt 42805634  T
118 agttagatgtgaaaatgacactggtctattcctctattgtagatgaaggaagatcacatgactgcttcatttggggccttctccgataccaagtacgttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42805635 agttagatgtgaaaatgacactggtctattcctctattgtagatgaaggaagatcacatgactgcttcatttggggccttctccgataccaagtacgttc 42805734  T
218 gttttctgtgttggaagtctagaaaatcaatgagtacgtgcaatatgcca-nnnnnnnncttcataattgttagtaacagctaagggtgtcagcttaaaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||    
42805735 gttttctgtgttggaagtctagaaaatcaatgagtacgtgcaatatgccatttttttttcttcataattgttagtaacagctaagggtgtcagcttaaaa 42805834  T
317 gtgaagggccaagatcat 334  Q
    ||||||||||||||||||    
42805835 gtgaagggccaagatcat 42805852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 42792399 - 42792285
Alignment:
150 tctattgtagatgaaggaagatcacatgactgcttcatttggggccttctccgataccaagtacgttcgttttctgtgttggaagtctagaaaatcaatg 249  Q
    |||||||||||||||||||| | ||  ||||||||||||||||| ||||||||| ||  |||||||||||| ||| ||||| |||| ||||||||||| |    
42792399 tctattgtagatgaaggaagtttacgagactgcttcatttggggtcttctccgacacacagtacgttcgttatctatgttgaaagtatagaaaatcaacg 42792300  T
250 agtacgtgcaatatg 264  Q
    |||||||||||||||    
42792299 agtacgtgcaatatg 42792285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University