View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_30 (Length: 343)
Name: NF10080_low_30
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_30 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 33805682 - 33806022
Alignment:
| Q |
1 |
attatggtagttgagactaagaaggttagcaaagagatgaacatggagttcaataatgaaaaggcagaagatgctgatgaatcttcttctgaaggttctg |
100 |
Q |
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| T |
33805682 |
attatggtagttgagactaagaaggttagcaaagagatgaacatggagtttaataatgaaaaggcagaagatgctgatgaatcttcttctgaaggttctg |
33805781 |
T |
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| Q |
101 |
aatttgtagaagatattgagattagggaggaaaacattgatgatgactctgtggaagaagtcaacaataacacagtgtgatcaagacttggagaacaaac |
200 |
Q |
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| T |
33805782 |
aatttgtagaagatattgagattagggaggaaaacattgatgatgactctgtggaagaagtcaacaataacacagtgtgatcaagacttggagaacaaac |
33805881 |
T |
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| Q |
201 |
tatttttgcaggaatcttgggccaatatggctaaagatgatgatactgaagcaagactactaactgatattgagagagagttttcaaagaatgccgatga |
300 |
Q |
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| T |
33805882 |
tatttttggaggaatcttgggccaatatggctaaagatgatgatactgaagcaagactgctagctgatatt--gagagagtttccaaagaatgctgatga |
33805979 |
T |
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| Q |
301 |
ttttcaattagtggtaacaaagaggaagaagaagcaacaaaga |
343 |
Q |
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| T |
33805980 |
ttttcaattagtggtaacaaagaggaagaagaagcaacaaaga |
33806022 |
T |
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