View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_32 (Length: 336)
Name: NF10080_low_32
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 31828449 - 31828180
Alignment:
| Q |
1 |
agaacataacaaaaacaaaatgcatatgaatttgaagtaaaactaattagcattattactacaaaacaaaccttgcttttcttcaagttatcatctctca |
100 |
Q |
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| T |
31828449 |
agaacataacaaaaacaaaatgcatatgaatttgaagtaaaaccaattagcattattactacaaaacaaaccttgcttttcttcaagttatcatctctca |
31828350 |
T |
|
| Q |
101 |
ttgttgatacagcttcatatagattttgtttcttcaatctaatatagttttttgtgttgaaacaatgaagttggttgcttcaagaagggttaaagttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31828349 |
ttgttgatacagcttcatatagattttgtttcttcaatctaatatagttttttgtgttgaaacaatgaagttggttgcttcaagaagggttaaagttgaa |
31828250 |
T |
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| Q |
201 |
aaagcagagaatgagatgaaagtacaagtaataaaaacaacccttataatacgggttttttctgttgaat |
270 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31828249 |
aaagtagagaatgagatgaaagtacaagtaataaaaacaacccttataatacgggttttttctgttgaat |
31828180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 38124421 - 38124465
Alignment:
| Q |
77 |
ttttcttcaagttatcatctctcattgttgatacagcttcatata |
121 |
Q |
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||||||||||||| ||||||||||||||||| | | ||||||||| |
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| T |
38124421 |
ttttcttcaagttttcatctctcattgttgagaaaacttcatata |
38124465 |
T |
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