View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_33 (Length: 333)
Name: NF10080_low_33
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 39361056 - 39360750
Alignment:
| Q |
11 |
cacagaagaaaccgaagcatgaaaaacagttattgttaccatcaatcaaagctccataaatctccaaccacatgttcctgaacattattaggtggcatca |
110 |
Q |
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| T |
39361056 |
cacagaagaaaccgaagcatgaaaaacagttattgttaccatcaatcaaagctccataaatctccaaccacatgttcctgaacattattaggtggcatca |
39360957 |
T |
|
| Q |
111 |
ctgattgtccatcatagtaaatctgataaaacttcatgtaatcctcgtatgccaacaattcatcagacaattcttgtacctcattttttgctaattcagc |
210 |
Q |
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| T |
39360956 |
ctgattgtccatcatagtaaatctgataaaacttcatgtaatcctcgtatgccaacaattcatcagacaattcttgtacctcattttttgctaattcagc |
39360857 |
T |
|
| Q |
211 |
ttcagcttgttcaacaacatgtgtttcttgttctaccactttctctttctctttttcatgttcattcacaacaccaccaaaataaccgaattcattctca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39360856 |
ttcagcttgttcaacaacatgtgtttcttgttctaccactttctctttctctttttcatgttcattcacaacaccaccaaaataaccgaattcattctga |
39360757 |
T |
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| Q |
311 |
ttggaac |
317 |
Q |
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||||||| |
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| T |
39360756 |
ttggaac |
39360750 |
T |
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