View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10080_low_40 (Length: 308)

Name: NF10080_low_40
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10080_low_40
NF10080_low_40
[»] chr7 (1 HSPs)
chr7 (1-291)||(28968908-28969198)


Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 28969198 - 28968908
Alignment:
Q  1 caatgcacttttcctggatttgtttagatttggggtataagtttcaatgctcaatttggatttgaaatgagttaaccatgtaatgtaatgaataaatgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28969198 caatgcacttttcctggatttgtttagatttggggtataagtttcaatgctcaatttggatttgaaatgagttaaccatgtaatgtaatgaataaatgta 28969099  T
Q  101 cagtgcttgctttatgtcaaaaatcagtgttacaaataatgaaagatacaattaaccacatactaattagtattcataattaactacatatttaaattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28969098 cagtgcttgctttatgtcaaaaatcagtgttacaaataatgaaagatacaattaaccacatactaattagtattcataattaactacatatttaaattat 28968999  T
Q  201 gttggtgagtagtaaaaaatgatatttatgtcaaaaattatatctaaataacatttcacataaaattttgacatcgtaattgcacattatt 291  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28968998 gttggtgagtagtaaaaaatgatatttatgtaaaaaattatatctaaataacatttcacataaaattttgacatcgtaattgcacattatt 28968908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University