View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10080_low_42 (Length: 295)

Name: NF10080_low_42
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10080_low_42
NF10080_low_42
[»] chr4 (4 HSPs)
chr4 (1-275)||(8646877-8647151)
chr4 (231-275)||(8611729-8611773)
chr4 (233-275)||(8555747-8555789)
chr4 (233-275)||(8556933-8556975)
[»] chr7 (1 HSPs)
chr7 (47-142)||(37142313-37142407)
[»] chr5 (1 HSPs)
chr5 (125-225)||(11831180-11831281)
[»] chr8 (1 HSPs)
chr8 (103-173)||(12050558-12050627)
[»] chr6 (1 HSPs)
chr6 (136-201)||(31926033-31926097)
[»] chr3 (2 HSPs)
chr3 (1-64)||(29862922-29862985)
chr3 (144-225)||(29863160-29863241)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 8647151 - 8646877
Alignment:
Q  1 ttgttacttactagtattagtgtgttgttatcgaaatgattggatgttagggaataggtgttaactgaccatttgattaattgtgaaggcacatatatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8647151 ttgttacttactagtattagtgtgttgttatcgaaatgattggatgttagggaataggtgttaactgaccatttgattaattgtgaaggcacatatatat 8647052  T
Q  101 acatatatgttattgttaattgtttaataattagtgattgtggatcaatgcctaattatagactagtaatcaacattttaaatataaattttacaatcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8647051 acatatatgttattgttaattgtttaataattagtgattgtggatcaatgcctaattatagactagtaatcaacattttaaatataaattttacaatcta 8646952  T
Q  201 gttaatcactttttgaatagatacaaacctattgtggattggagctatcataataaacctttgattaacaaaact 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8646951 gttaatcactttttgaatagatacaaacctattgtggattggagctatcataataaacctttgattaacaaaact 8646877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 8611729 - 8611773
Alignment:
Q  231 attgtggattggagctatcataataaacctttgattaacaaaact 275  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  8611729 attgtggattggagctatcatagtaaacctttgattagcaaaact 8611773  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 8555789 - 8555747
Alignment:
Q  233 tgtggattggagctatcataataaacctttgattaacaaaact 275  Q
    |||||||||||||||||| ||||| |||||||||| |||||||    
T  8555789 tgtggattggagctatcacaataaccctttgattagcaaaact 8555747  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 8556933 - 8556975
Alignment:
Q  233 tgtggattggagctatcataataaacctttgattaacaaaact 275  Q
    |||||||||||||||||| |||||| ||||||||| |||||||    
T  8556933 tgtggattggagctatcacaataaatctttgattagcaaaact 8556975  T

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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 37142407 - 37142313
Alignment:
Q  47 ttagggaataggtgttaactgaccatttgattaattgtgaaggcacatatatatacatatatgttattgttaattgtttaataattagtgattgtg 142  Q
    ||||||| |||||||||| ||||  ||| || |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  37142407 ttagggagtaggtgttaattgacggttt-atcaattgtgatggcacatatatatacatctatgtcattgttaattgtttaataattagtgactgtg 37142313  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 11831180 - 11831281
Alignment:
Q  125 taataattagtgattgtggatcaatgcctaattatagactagtaatcaacattttaaatataaattttacaatctag-ttaatcactttttgaatagata 223  Q
    |||||||||||||||||| ||||||| ||| |||| ||||||||||| ||||||||| ||||  ||| ||||||||| |||||||| |||||| ||||||    
T  11831180 taataattagtgattgtgaatcaatgactatttatcgactagtaatcgacattttaagtatatttttcacaatctagcttaatcacgttttgattagata 11831279  T
Q  224 ca 225  Q
    ||    
T  11831280 ca 11831281  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 12050558 - 12050627
Alignment:
Q  103 atatatgttattgttaattgtttaataattagtgattgtggatcaatgcctaattatagactagtaatcaa 173  Q
    ||||||||||||||||||| ||||||||||| | |||||| |||||||||||||| | |||||||||||||    
T  12050558 atatatgttattgttaatt-tttaataattactaattgtgaatcaatgcctaattttcgactagtaatcaa 12050627  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 31926033 - 31926097
Alignment:
Q  136 gattgtggatcaatgcctaattatagactagtaatcaacattttaaatataaattttacaatctag 201  Q
    ||||||| |||||||||||||||| ||||||||||||| ||||||||||||  |||||||||||||    
T  31926033 gattgtgaatcaatgcctaattatcgactagtaatcaa-attttaaatatattttttacaatctag 31926097  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29862922 - 29862985
Alignment:
Q  1 ttgttacttactagtattagtgtgttgttatcgaaatgattggatgttagggaataggtgttaa 64  Q
    ||||||||| |||||| ||||||| |||||| || |||||||| ||||||| ||||||||||||    
T  29862922 ttgttacttgctagtaatagtgtgatgttattgagatgattggttgttaggcaataggtgttaa 29862985  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 29863160 - 29863241
Alignment:
Q  144 atcaatgcctaattatagactagtaatcaacattttaaatataaattttacaatctag-ttaatcactttttgaatagataca 225  Q
    |||| |||||||||||  || | ||||||||||||||||||| | || |||||||||| ||||||||||||||| || |||||    
T  29863160 atcattgcctaattatcaacaactaatcaacattttaaatat-atttctacaatctagcttaatcactttttgattatataca 29863241  T

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