View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10080_low_43 (Length: 291)
Name: NF10080_low_43
Description: NF10080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10080_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 9362759 - 9362498
Alignment:
| Q |
18 |
gttcttgtttatttcagggtggcatgtcatgtcaccctcgctcttgttgcagcacnnnnnnngaccctacacctgcacacatcctttattgacgaccaga |
117 |
Q |
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| T |
9362759 |
gttcttgtttatttcagggtggcatgtcatgtcaccctcgctcttgttgcagcacaaaaaaagaccctacacctgcacacatcctttattgacgaccaga |
9362660 |
T |
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| Q |
118 |
gttttaataatgcatctgttaggaaaactatgcctcaatttccttcctaccctcagatctcataaatttaaaagtctactattgttgtnnnnnnnnttct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
9362659 |
gttttaataatgcatctgttaggaaaactatgcctcaatttccttcctaccctcagatctcataaatgtaaaagtctactattgttgtaaaaaaaattct |
9362560 |
T |
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| Q |
218 |
catttcagattttagaaacaaaattttttcccattgccactcaaacaaagctccatcttctc |
279 |
Q |
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||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| |
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| T |
9362559 |
catttcagattttagaaacaaaaacttctcccattgccactcaaccaaagctccatcttctc |
9362498 |
T |
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